Gene detail

Detailed information of Ppa0G294130 in Paragorgia papillata

Genomic Location: Contig00435:5625798...5627392
NR annotation: CAB4007393.1, Nuclear factor erythroid 2-related factor 1 [Paramuricea clavata]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P20482	Segmentation protein cap'n'collar OS=Drosophila melanogaster OX=7227 GN=cnc PE=2 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008038 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03131 all species →	bZIP_Maf	bZIP Maf transcription factor	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR047167 all species →	Family	Nuclear Factor Erythroid-derived 2-like	Interproscan
IPR004827 all species →	Domain	Basic-leucine zipper domain	Interproscan
IPR004826 all species →	Domain	Basic leucine zipper domain, Maf-type	Interproscan
IPR008917 all species →	Homologous_superfamily	Transcription factor, Skn-1-like, DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24411 all species →	NUCLEAR FACTOR ERYTHROID 2-RELATED FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09040	NFE2L1_3; nuclear factor erythroid 2-related factor 1/3	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.