Gene detail

Detailed information of Ppa0G294620 in Paragorgia papillata

Genomic Location: Contig00435:6362425...6376762
NR annotation: XP_028391134.1, protein CLP1 homolog isoform X1 [Dendronephthya gigantea]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A7RG82	Protein CLP1 homolog OS=Nematostella vectensis OX=45351 GN=v1g236308 PE=3 SV=1
Q92989	Polyribonucleotide 5'-hydroxyl-kinase Clp1 OS=Homo sapiens OX=9606 GN=CLP1 PE=1 SV=1
Q4R7R3	Polyribonucleotide 5'-hydroxyl-kinase Clp1 OS=Macaca fascicularis OX=9541 GN=CLP1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004210 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06807 all species →	Clp1	Pre-mRNA cleavage complex II protein Clp1	Family	Interproscan
PF16575 all species →	CLP1_P	mRNA cleavage and polyadenylation factor CLP1 P-loop	Domain	Interproscan
PF16573 all species →	CLP1_N	N-terminal beta-sandwich domain of polyadenylation factor	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010655 all species →	Domain	Pre-mRNA cleavage complex subunit Clp1, C-terminal	Interproscan
IPR038239 all species →	Homologous_superfamily	Clp1, N-terminal beta-sandwich domain superfamily	Interproscan
IPR038238 all species →	Homologous_superfamily	Clp1, C-terminal domain superfamily	Interproscan
IPR032319 all species →	Domain	Polyribonucleotide 5'-hydroxyl-kinase Clp1, P-loop domain	Interproscan
IPR045116 all species →	Family	Polyribonucleotide 5-hydroxyl-kinase Clp1/Grc3	Interproscan
IPR028606 all species →	Family	Polyribonucleotide 5-hydroxyl-kinase Clp1	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR032324 all species →	Domain	Clp1, N-terminal beta-sandwich domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12755 all species →	CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1P	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0031124 all species →	Biological Process	mRNA 3'-end processing	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006378 all species →	Biological Process	obsolete mRNA polyadenylation	Interproscan
GO:0006388 all species →	Biological Process	tRNA splicing, via endonucleolytic cleavage and ligation	Interproscan
GO:0006396 all species →	Biological Process	RNA processing	Interproscan
GO:0051731 all species →	Molecular Function	polynucleotide 5'-hydroxyl-kinase activity	Interproscan
GO:0005849 all species →	Cellular Component	mRNA cleavage factor complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14399	CLP1, HERB; polyribonucleotide 5'-hydroxyl-kinase	EC:2.7.1.78	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.