Gene detail

Detailed information of Ppa0G294840 in Paragorgia papillata

Genomic Location: Contig00436:118409...155130
NR annotation: CAB4025640.1, collagen alpha-1(I) chain-like [Paramuricea clavata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Ppa0G294840

ATGCGGAATACGAGTATAGTTGTTATAGCAGGAGATCCCGTGAATGGATTTCCAGGAGAAGTAGGAGAACCAGGTTTTGCTGGATTGTTTGGTCCACCGGGTCGTCCAGGTTTTGATGGTGTTTTTGGTTTGCATGGAACTCCTGGTGATCCTGGTGCCCTAGGGCTGCCTGGACTTCAAGGAGAACCTGGAAAACGGGGAAGGGATGGACAAGACGGCGATCCGGGAGTACGAGGACCTTCAGGTGAAAAGGGATTTCCAGGTCCACCTGGATATCCTGGCCCAGCTGGAGTTGCTGCTCCTCCGGGACCAATAGGTTTTGTGGGGGAGCCTGGCAACAAAGGAAAGAAAGGAGCAGTTGGATATCCAGGCGAAGTTGGTGAGGACGGCCCGATTGGTGATAAGGGTTTACAAGGACCACCAGGGTTACCTGGTACATCAGGTCCACCGGCAGCGCCTGGATTTGATGGAGAGGCTGGTTCTGTAGGTGATGAGGGTTCTGCTGGTCCACAGGGCGGGGTAGGCAGCCGTGGAAAAAGAGGAGATTCTGGAACAGTGGGACTTCCTGGACTTCCAGGTGATCGTGGCAGGATAGGCATTGAGGTATATGCGTTACCTGGCCCATATTCTTTGATTGGGCCAGGCGGACGAAGAGGACCCAAAGGATTGCATGGGGTGCTTGGACACAAGGGAAATATTGGTCGACAAGGGACGCGTGGATCCACTGGTCGACACGGGGACCCGGGATCACCTGGAGTTGAGGGTCCTCCTGGTTCACTTGGTGCTAGTGGATTTCAGGGCCCGGTAGGAGAAACTGGTGAACCTGGCATTCTTGGTAACAATGGCGGAGGGGGATTTCTAGGCTCTGTTGGAGTATCTGGTAATCCAGGACCCGAGGGCAAAAAGGGATCAAAAGGTGCTGTCGGACTTTCTGGTGATAAAGGAGAAAATGGAACACAGGGCATTGTTGGAGCGAATGGCGTTGATGGACAAACTGGTGCACGCGGTGCTAAGGGAATCCAGGGTTCACGTGGTGATGATGGTGAACGTGGACCACGTGGGGGAAACGGTACTGCTGGTCCAACTGGTTTCAAAGGAGAGGCCTCCGTCAAAGGGCTAAAGGGCATGCCCGGAACAGTCGGGAAACCAGGACAATCTGTTAATGGTACATCGGGACTTCCGGGACCAGAAGGAAACCCAGGTATCGATGGCCTAGCAGGATTGAAGGGAGAAAAAGGAAAACCAGGTTTACTTGGGCCAAGTGGATCTATAGGACTTTGGGGTGAGAATGGAACATTGGGGAAAACTGGTGATACTGGAAAAGCGGGAAGTAAAGGGAACAAAGGGAAAATTGGTCTACCTGGTCAAGGAGTAAAGGGAGAGCGTGGCACTATAGGTTTATCTGGTCTAGATGGCGCTCGTGGAGAACCAGGTCCAGCGGTGAGAGGATCTATGGGTCCAGAGGGACAACCCGGAAAGAAGGGTGCTACAGGAAAACCAGGTCCACCTGGTCCACCCGGGCTTCAAGGACTACAGATGATCTCTGACGTCAGGAGCAGGGTACAGTATTTTCACACCTATCTTCAGCTCAAAATGGCTCTGCACAAGAAACCAGATGGGACAAAGAAATATCCAGCTATATCCTGCGCTGAATTATATAGAAATTATCCTACATTAGAGAGCGCACATTACTGGATTGATCCCAATGAAGGTTCACACGAAGACGCTGAACAGGTTTATTGTTATTTTCAAAGGAACGCGACATGTTTAGATCCCGTGACAAATAAGACGGAAAACAAAAAGTGGTTCACAGGTTCTGATGGATACAAATGGTTCACAGAAGAACTGGTTGGCGTACAAGATACAGACAAGTTCAGTTATGCTTTTGACGATGTTCAGCTACAAATGTTGCAGCTACATAGCAATCAAGCATGGCAAAAAATAACTTACCATTGTCTGAACTCTGTGGTGTGGAGTAACACTAGTTTTCTGATTGAGCACTCCATTAAACTTCAAGGAGATGATGACCATGAATTTCATAATAAAATGCCTCGAAAATTACGGCCAGTTACTATCGAAGATAACTGTCAGATTAAAGATGGCCAGTGGAATCAAACTATCATTGAAGTGAGATCGCAAAATCCTCTTCACCTTCCCATACGAGATGTTGCAGTTTACGATACTGGTGACGATGGCGAAGAATTTGGATTGGAACTTGGACGTGTTTGTTTTTCACCGTAG

Transcript

Ppa0G294840

Protein

Uniprot

Uniprot term	Description
P08121	Collagen alpha-1(III) chain OS=Mus musculus OX=10090 GN=Col3a1 PE=1 SV=4
O93484	Collagen alpha-2(I) chain OS=Oncorhynchus mykiss OX=8022 GN=col1a2 PE=2 SV=2
P13941	Collagen alpha-1(III) chain OS=Rattus norvegicus OX=10116 GN=Col3a1 PE=2 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01391	Collagen	Collagen triple helix repeat (20 copies)	Repeat	Interproscan
PF01410	COLFI	Fibrillar collagen C-terminal domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008160	Repeat	Collagen triple helix repeat	Interproscan
IPR000885	Domain	Fibrillar collagen, C-terminal	Interproscan
IPR050149	Family	Collagen superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24023	COLLAGEN ALPHA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005201	Molecular Function	extracellular matrix structural constituent	Interproscan
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0030020	Molecular Function	extracellular matrix structural constituent conferring tensile strength	Interproscan
GO:0030198	Biological Process	extracellular matrix organization	Interproscan
GO:0031012	Cellular Component	extracellular matrix	Interproscan
GO:0062023	Cellular Component	collagen-containing extracellular matrix	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K19719	COL2A; collagen type II alpha	-	Glycosaminoglycan binding proteins	ko00536	deepkoala