Gene detail

Detailed information of Ppa0G297420 in Paragorgia papillata

Genomic Location: Contig00437:1660651...1747839
NR annotation: XP_028401470.1, rho GTPase-activating protein 7-like isoform X1 [Dendronephthya gigantea]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G297420

ATGTCGAATTTGAACAGACGAGGCAGTTTGTCAACATCTGGCATTGATTCCAGTGGTCTCGACAATGTATTTAGCGAAGAGTTATACACGAACGACCACCATTTGACATGCAGTTATGGGTTTATTATTTTTTATCTTAAATGGAGGCGGATGTTCAAAACTATATGGAGTTCGTGCAAGCTCGTTATGGTTGAGACAGTAGACAGGAAGCGATTGTATCTGGAGCTAGAAGCACTTGAATCTTGCTACTGGTTGAGGGCTGCTGGCTTTCCTCAGTACGCCCAGATGTATGAAGACTCCTTATTTCCGATCGATATTGCTGCTGTAGCCACAGACCACGACTTCTTAGATCAGGATTCTATTGAAGCGCTTTTCAGGCGACTTCAGACACTCAACAACTGTGCCAAACTGAAGCTGCATCCAAGAAAGGCCGACGAATATGACTCGGACGATGAAGAACTTATCGCGCTTAGTTCAAGATGGAAATTACAGCGAAGAAACAGAAAATGGTCGAGAAGGAAGAGATCAGATGATAACTTAAGAGTGGCCATAGCAGAAACCCCTTTGAATTGTTCTCCCAAAGAATCAAGGATGTTTACGCTTTCAAAGGAAAATGATCCTGTAAAAAAGGAGAATGATAAAACTATAAATGTAAATATTAACAACAATGGAAGTAATACCGCGCTTGAACTACTTTACTTAAGACTGAACGAAAGAAGACCGAGTCTGTACGACAATCTTCCTCTGAACAATTGCACTCGAAACTCTTTTCCGAAGCCCTTGCAAATAATAGAGGGGGGCGGTGATACCGAAGTTCGTTCTCCAGTAGCCAAGAGACGACCAGGCAGTGATCATTACTCGTCATCTCATAGTACTGTTGGAGATGCATTAGGATCATCACCTGAAGATCAATCATCTGACGAGGAAGACGTATCAAAGGATTTAGAACTGGTAAAATCGTTAAACGATGATGCACCTCGTACGGAAAAACCGAGAGTCAAAAAAGCCAGATGGCACAGTTTTCAACGCGCGAGGAATCCACGAAGAGAGTCGGCTCTACCGTCTTTGAAAATTTCTCATTTATCTGGTGGACAATTAGCTGTTCTAAGAAAGCTTTCTCTGCTCAAGTTAACGGCGTTAATAGAAAGATACTCGACTGTGCATAGAGGAATAGCCTGGTCTGTACCTAGAATATTCAAGAAAATTATTTCTCCAGATTATAAAGGAAAAAACGTATTTGGAGTACCTCTCTCTGTTAATGTACAACGCACTGGCCACTCATTACCCAAGCCTATTCTTTCTGCAATTAGTTTCTTAAGGAGAACAGCGTTGCAGTCTGTTGGACTTTTTAGAAGATCTGGTGGAAAACAAAGAATCCATCAATTGAAGTCCCTAATTGAGGAAGATCTTGATGTGACTAGCTTTGACGACTGGGCAATCTACGATATTGCTGATGTACTGAAGATTTACTTCAGGGAGTTGCCAGAACCTCTGTTAACAGTCAAGTTGGCAGACACATTTTTGTCAATTCATCAACATGTTCCCAAAGAACTTAGGTTAGGAGCAATGCAGGCTGTCGTTCTACTCATGCCAGACGAGAACCGGGAAGCATTGCAAACTCTTTTGTTGTTTCTCAACGATGTAGCTCAACAAGCAAGTGTTAATCAGATGAACGCCAGCAATTTAGCCGTATGCTTTGTTCCTGCATTTTTTCACTTGTGTGGCGCCTCGGAAGATCTTTTTGGTCATCCCAAGAGGGTAAAACGAACCGCGATCAACAAAGCAGCCAAGGAACTAACAAGTGGATTGGATGCTCAAGAATGTATCACACAAATGATTACGGATGTTAAGAAATTGTTTGCTGTCCCCCAAGATACGATGATGAAATGTAAATTCTCGTATATTGAGCATGGAAAACCTGTAAATCTTGACGAGTTAGGTCGTGTTGATGGATATACCAACGAAGATTATCACAGCTATCTTGACACATGTGTCGCATCATTATTAAAGGAATCGCGGTTAAAGTTTAAAAATTGGTTAACGTACACGTGGCCTGAAGCCGTTCCCTCTATCGAGGTGTCGTACTGGAAAGTAAGGGACGGCTACCCATTGAGGTTATGGCGGGCGACTACTGAAATCCAAGCCGATCCTGAGATTGTGTTAAGAAGGATTGTTCATGAGCGACACCTCTGGGACGAAGAATTAATTTCTTGGGATGTGATTGAGCAGCTCTCAGACAACACCGAAGTCTTCAGATACGTAACGCAAACTGTTTTGTTGCATCCGCCACGAGATCATGTCGTTGTGAGAACATGGCGCACAGACATTGACAACGGAAAATGTGCCATTGTATCCACATCAATTGCCCATCCAAACGCTGCGGTTTCTGACGGTGTCCGCGCGACTGTGTTAGCATCCAGATACTTGATAGAACCTATCGAACCTGGAAGATCACGTCTTACACACGTTTATCGAGTAGACCTCAGGGGTCGCACTCCTGATTGGTACAACGCTGCTATGCCACCACTTCTCGCAAACTCTATTCAAAGAATAAAGAACTCCTTTGCAGGCGATGCTGCTGATTTGGAAACAAACGTCTGA

Transcript

Ppa0G297420

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A7E300	Rho GTPase-activating protein 7 OS=Bos taurus OX=9913 GN=DLC1 PE=2 SV=1
B9VTT2	Rho GTPase-activating protein 7 OS=Canis lupus familiaris OX=9615 GN=DLC1 PE=2 SV=1
Q923Q2	StAR-related lipid transfer protein 13 OS=Mus musculus OX=10090 GN=Stard13 PE=1 SV=5

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001725 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00620 all species →	RhoGAP	RhoGAP domain	Domain	Interproscan
PF07647 all species →	SAM_2	SAM domain (Sterile alpha motif)	Domain	Interproscan
PF01852 all species →	START	START domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000198 all species →	Domain	Rho GTPase-activating protein domain	Interproscan
IPR013761 all species →	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR023393 all species →	Homologous_superfamily	START-like domain superfamily	Interproscan
IPR001660 all species →	Domain	Sterile alpha motif domain	Interproscan
IPR008936 all species →	Homologous_superfamily	Rho GTPase activation protein	Interproscan
IPR002913 all species →	Domain	START domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12659 all species →	RHO-TYPE GTPASE ACTIVATING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0030036 all species →	Biological Process	actin cytoskeleton organization	Interproscan
GO:0035023 all species →	Biological Process	regulation of Rho protein signal transduction	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0008289 all species →	Molecular Function	lipid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20632	DLC; deleted in liver cancer protein	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.