Gene detail

Detailed information of Ppa0G298170 in Paragorgia papillata

Genomic Location: Contig00437:2904419...2915959
NR annotation: XP_028402049.1, succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial-like [Dendronephthya gigantea]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5RC29	Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial OS=Pongo abelii OX=9601 GN=SDHD PE=2 SV=1
Q6PCT8	Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial OS=Rattus norvegicus OX=10116 GN=Sdhd PE=2 SV=1
Q9CXV1	Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial OS=Mus musculus OX=10090 GN=Sdhd PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008909 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05328 all species →	CybS	CybS, succinate dehydrogenase cytochrome B small subunit	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR034804 all species →	Homologous_superfamily	Fumarate reductase/succinate dehydrogenase, transmembrane subunit	Interproscan
IPR007992 all species →	Family	Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, CybS	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13337 all species →	SUCCINATE DEHYDROGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005740 all species →	Cellular Component	mitochondrial envelope	Interproscan
GO:0005749 all species →	Cellular Component	obsolete mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	Interproscan
GO:0006099 all species →	Biological Process	tricarboxylic acid cycle	Interproscan
GO:0006121 all species →	Biological Process	mitochondrial electron transport, succinate to ubiquinone	Interproscan
GO:0008177 all species →	Molecular Function	succinate dehydrogenase (quinone) activity	Interproscan
GO:0020037 all species →	Molecular Function	heme binding	Interproscan
GO:0048039 all species →	Molecular Function	ubiquinone binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Ppa0G298170.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.