Gene detail

Detailed information of Ppa0G300280 in Paragorgia papillata

Genomic Location: Contig00438:3173337...3177350
NR annotation: CAB4032863.1, Short stature homeobox 2 [Paramuricea clavata]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O15266	Short stature homeobox protein OS=Homo sapiens OX=9606 GN=SHOX PE=1 SV=1
O35750	Short stature homeobox protein 2 (Fragment) OS=Rattus norvegicus OX=10116 GN=Shox2 PE=2 SV=2
O60902	Short stature homeobox protein 2 OS=Homo sapiens OX=9606 GN=SHOX2 PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000263 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046 all species →	Homeodomain	Homeodomain	Domain	Interproscan
PF03826 all species →	OAR	OAR motif	Motif	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003654 all species →	Domain	OAR domain	Interproscan
IPR017970 all species →	Conserved_site	Homeobox, conserved site	Interproscan
IPR001356 all species →	Domain	Homeobox domain	Interproscan
IPR052631 all species →	Family	Paired homeobox Bicoid subfamily	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46255 all species →	SHORT STATURE HOMEOBOX	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:1990837 all species →	Molecular Function	sequence-specific double-stranded DNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Ppa0G300280.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.