Gene detail

Detailed information of Ppa0G300460 in Paragorgia papillata

Genomic Location: Contig00438:3492758...3551817
NR annotation: CAB3977797.1, Nodal modulator 1 [Paramuricea clavata]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G300460

ATGGAGTCATTTTTGTGGTATTTGTTTTTATTTCTTTACGTTTTTGATGGAATTGTAGCTGATGATGTTGTTGGCTGTGGTGGCTTTGTTAAATCAGATATAGATATCAACTACTCCTTCATTGAAATGAAGCTTTATACAAAACAAGGTGTTTTGAAACATCAAACAGACTGTGCTCCAAATAATGGTTATTTTCTAATCCCATTATACGATAAGGGAGACTTTGTGCTGAAAGTTGAACCTCCACAAGGCTGGAGTTTTGATCCTGTCAGTGTAGATCTTCATATTGATGGGAAAACAGATAGATGTACCAAAGGAGAAGATATAAACTTTTTATTTACTGGTTTTACATTGTTTGGAAAGGTTGTGAGTAAAGGTCGTCAAATGGGGCCATCTGGTGTTAAAATTACATTAAAAAGTGAAGGTCCTGAAAGACAAACTGAAACAACAGAGGAAGGATTTTTCAGTTTTGCTAGAGTGCTTCCAGGAAATTATTCACTTGTAGCATCTCATCCAACATGGACTTTTAAAACTTCTAGTGCTACGGTGGACGTATTAAATAACAATGTGGAAGTCATGGATAAGCTGGTTGTTGCTGGATATGACGTAAAGGGGCATGTTTTGAGTGAGCACCAAGCTATACAAGGAGTGGATTTCATTTTGTTTTCCCAGTTACTAAAGGCTGAGGATGTAAGTGGTTGTGATGCAATTGAACCAAGAATTCTGGAAAAGATTTCGAAGAAAGCCGAAGGAGTTGCTTTATGCAAGACGAAGTCAAGAAAAGATGGCACGTTTGTGTTTTCTAGTGTTCCAAGTGGAGAATATACATTGGTTCCATTTTACGAAGGTGAAGTTATAACATTTGATGTTGTACCAACCAAACTTAAATTCAAAGTTAATTACAAAAGCGTTGTACTCAAGACGCCTTTCGAAGTTCATGGATTTTCTGTGAGTGGAAAGATAATAAATTTGGGAAAGGCAAGTATTAGAATTGGTGATGGAATTGCCAACGCCAAGGTCTTCCTAGATGGAGCACAGAAAGGTGTAACTAATGCTGAAGGAGTGTATGTGTTGGACAACGTCACATCTGGTGTTTACACTATTTTGGCCGAAAAACCAAACATTTTTTTCAATCCTGTCAAAATCCAAATCAATCCGAACACACCGCATCTGGCCAACATGAAACCATCTAGTTACAATCTGTGTGGTCAACTAAAAGTTGAGGAACTTCCTCCTGGCAGCTTACAGATGCAAAAGAGAAAAGTCATTCTCACTCCTACCCAAGGAAAGAAAACAGCAGCAATATCCACTACAACTGACACCGATGGACGATTTTGCTTCCGAGTACAGCCTGGAACATATCGTGTTCAACCTGTTGTATTGACTCAAGAACACAATTCAGGATTGGTATTAAAGCCTGAAGAATATACTGTCCAGATTATAGACGAGCCTCGTTTAGGATTAATGTTCACTCAGTTTTTAGCGACTGTTAGTGGGACAGTAAAATGCTTAGATGGATCGTGTGGAAGTTTATCAGTATCACTGACCTCTCAGCGACAAACTGAACCAAGCAAAGTCGTTGCTATGGTCAAGGATGGGCCAACAGGAGGGTCACTTAGTTTTTCAAAAATTCTTCCTGGAAAATACAAAGCGGTAATTCTTCAAGATTCCTGGTGTTGGAAGAATAAATCTTTAGAAATCGAGATAAAGGATTCAGATGTTGATACTTTAGACTTTGTTCAGTCTGGATATGTGCTCAAGTGTTCTCTGTCGCACAACATAACTTTGCGTTTTGCTTTAGAAGGCCGTTCTGAGGTTGTCGGATCGTTCAACTTGACTAAAGGAGTTAACATATTTTGTTTGAATGAACCTGGTGTCTATACGTTGACGCCAAAATCATGTCATCGCTTTGAGCAAGATTCGTACAAATATAATACTTCTACGCCAACTGTTTTAAGCTTTGCAGCAACTGAACATTTGCTCTCGATTATTGTCAGTGCGAGTCAATCTGCAAGTGATTTGAAAATAAGACTAAGAAGAGTAAAGGCAAATACTGAGGAGTTACTTGAACCAGTGGAAGAAACAGATCAGAAGGAAAATCAACAAACTAACGCTACTGAGGGGGAAAAGAATAAACATTTATATAAAGCTTCTTTCTGGGCAAAGAAAGACGAACAACTGGAGGTAACTCCTGTTTCTTCAAAACTTTTATTTTATCCTCCAGTGGCAACTGTGACAATAAAAGATGATTGTCCTGGTGGGCTTGTGGAGTTTGATGGCCAAGTTGGTGTCTTTATCGATGGTCAAATTGATCCAGCATTGGAGAATGTGAAGATCATTATTAAACCAGACACTTCTGATGATCCAAGTAAAGCCACGACTGTCTACAGCAATGATCGAGGCTCATACAGGGTTGGTCCTCTTCATGGTAATTTACGATATGACTTGTCTGCTTCTAAAGAAGGGTACATCCTGAATCCAGTTCAAGGACAGAAAGGGCATTTCACCGCTATTACGCTGGGACAAATAGAAATTAAGGTTTCAGATGAATCAAAGACTCTCCTGTCTGGCGTTTTAGTTTCTTTGAGTGGCAACAGTTTCCGTCAAAATAGAATCACTTCAGAAAATGAATCGTTGACATTTTCTAACTTGGTTCCTGGCGAGTACTTTTTCAAACCGATGCTAAAGGAGTTTGTCTTCAATCCTGTATCTCAGATTGTTCAGTTGAAAGAAGGATCTAGCGTTGTTGCAACATCTGAAGGAAAAAGAGTGGCATTTAGTTGTTATGGCTCTGTCACATCGCTCAATGGAAGACCAGAAAAGGACGTGGCGTTAGAGGCGGTTGGTTTGGATAGTTGTGAAGGCACGCAAGAAGAAACTGTGACAGACAAGGAAGGACATTACAGACTTAGGGGACTACAGCCTGGTTGTACGTACCGTGTGAGGGTCAAGTCTGGTGAAATTAATGCTCATATTGAAAGATCGACACCACAGTATATTGATATCCAGGTGCTGGAAAGTGACTTAGAAAATATACGTATGATTGTTTTTCGAGAAACTGGGTTATTGGAGGTGTCTGGAAATGTTCTCACTGAGCAAAACTTCTTGTCAACCATAAAGCTCTTGTTGTATCGCGAAAGAAATTTAGATTCACCGATTCACTCAACTACAGTTAGCTTGACTAGTTTCTTTCAGTTTCCACCAATACCAAGCGATGACCAGAACTATGTAATAAAAATGGAATCCAGTTTGTCTACTCATCAGTATAAACTCAAGTTACCTGAATCAAGTTTTACTGCCTCAGGACATCGTGTTCATGTAATGATGGAGTTTAAACCACAGAAACACTTCCTGGACCAAGAATCTTCTCATTCATCTATTCTATTTTTTCCAATCTTGGTTGCTGCATTGATAATTGGCATATATTATTCCAAGATCTCAGTCTTCGTTCGTGACGCTTTCCAACTTTTACAACAAGAACAAATACAAGCAGACAACGGAGAAGAAGCGACCAGAAACAGAAGGAAAAGAAGATAA

Transcript

Ppa0G300460

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P69849	BOS complex subunit NOMO3 OS=Homo sapiens OX=9606 GN=NOMO3 PE=1 SV=2
Q5JPE7	BOS complex subunit NOMO2 OS=Homo sapiens OX=9606 GN=NOMO2 PE=1 SV=1
Q15155	BOS complex subunit NOMO1 OS=Homo sapiens OX=9606 GN=NOMO1 PE=1 SV=5

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004649 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09430 all species →	EMC7_beta-sandw	ER membrane protein complex subunit 7, beta-sandwich domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013784 all species →	Homologous_superfamily	Carbohydrate-binding-like fold	Interproscan
IPR019008 all species →	Domain	ER membrane protein complex subunit 7, beta-sandwich domain	Interproscan
IPR051417 all species →	Family	Serine-Aspartate Repeat-Containing	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23303 all species →	CARBOXYPEPTIDASE REGULATORY REGION-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0030246 all species →	Molecular Function	carbohydrate binding	Interproscan
GO:0005789 all species →	Cellular Component	endoplasmic reticulum membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K26500	NOMO1_2_3; BOS complex subunit NOMO	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.