Gene detail

Detailed information of Ppa0G300690 in Paragorgia papillata

Genomic Location: Contig00438:3781412...3785507
NR annotation: XP_028400187.1, uncharacterized protein LOC114523452 isoform X2 [Dendronephthya gigantea]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A4XLQ1	Large ribosomal subunit protein bL17 OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903 / Tp8T 6331) OX=351627 GN=rplQ PE=3 SV=1
B9MKF2	Large ribosomal subunit protein bL17 OS=Caldicellulosiruptor bescii (strain ATCC BAA-1888 / DSM 6725 / KCTC 15123 / Z-1320) OX=521460 GN=rplQ PE=3 SV=1
B3E858	Large ribosomal subunit protein bL17 OS=Trichlorobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) OX=398767 GN=rplQ PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004864 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01196 all species →	Ribosomal_L17	Ribosomal protein L17	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000456 all species →	Family	Large ribosomal subunit protein bL17	Interproscan
IPR036373 all species →	Homologous_superfamily	Large ribosomal subunit protein bL17 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14413 all species →	RIBOSOMAL PROTEIN L17	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0005762 all species →	Cellular Component	mitochondrial large ribosomal subunit	Interproscan
GO:0015934 all species →	Cellular Component	large ribosomal subunit	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02879	RP-L17, MRPL17, rplQ; large subunit ribosomal protein L17	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.