Gene detail

Detailed information of Ppa0G303630 in Paragorgia papillata

Genomic Location: Contig00438:10116437...10120104
NR annotation: XP_028403983.1, uncharacterized protein LOC114526577 isoform X2 [Dendronephthya gigantea]
Species abbreviation PPAPI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P26221	Endoglucanase E-4 OS=Thermobifida fusca OX=2021 GN=celD PE=1 SV=2
Q5YLG1	Endoglucanase A OS=Bacillus pumilus OX=1408 GN=eglA PE=1 SV=1
P26224	Endoglucanase F OS=Acetivibrio thermocellus (strain ATCC 27405 / DSM 1237 / JCM 9322 / NBRC 103400 / NCIMB 10682 / NRRL B-4536 / VPI 7372) OX=203119 GN=celF PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002174 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00759 all species →	Glyco_hydro_9	Glycosyl hydrolase family 9	Repeat	Interproscan
PF00553 all species →	CBM_2	Cellulose binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001701 all species →	Domain	Glycoside hydrolase family 9	Interproscan
IPR033126 all species →	Active_site	Glycosyl hydrolases family 9, Asp/Glu active sites	Interproscan
IPR001919 all species →	Domain	Carbohydrate-binding type-2 domain	Interproscan
IPR012341 all species →	Homologous_superfamily	Six-hairpin glycosidase-like superfamily	Interproscan
IPR008965 all species →	Homologous_superfamily	CBM2/CBM3, carbohydrate-binding domain superfamily	Interproscan
IPR012291 all species →	Homologous_superfamily	CBM2, carbohydrate-binding domain superfamily	Interproscan
IPR008928 all species →	Homologous_superfamily	Six-hairpin glycosidase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22298 all species →	ENDO-1,4-BETA-GLUCANASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004553 all species →	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0030246 all species →	Molecular Function	carbohydrate binding	Interproscan
GO:0030247 all species →	Molecular Function	polysaccharide binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01179	E3.2.1.4; endoglucanase	EC:3.2.1.4	Two-component system	ko02020	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.