Gene detail

Detailed information of Ppa0G305880 in Paragorgia papillata

Genomic Location: Contig00442:289376...301645
NR annotation: XP_028393048.1, mitochondrial assembly of ribosomal large subunit protein 1-like [Dendronephthya gigantea]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96EH3	Mitochondrial assembly of ribosomal large subunit protein 1 OS=Homo sapiens OX=9606 GN=MALSU1 PE=1 SV=1
Q5NLX3	Ribosomal silencing factor RsfS OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) OX=264203 GN=rsfS PE=1 SV=1
P0AAT7	Ribosomal silencing factor RsfS OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=rsfS PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007042 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02410 all species →	RsfS	Ribosomal silencing factor during starvation	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004394 all species →	Family	Protein Iojap/ribosomal silencing factor RsfS	Interproscan
IPR043519 all species →	Homologous_superfamily	Nucleotidyltransferase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21043 all species →	IOJAP SUPERFAMILY ORTHOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0017148 all species →	Biological Process	negative regulation of translation	Interproscan
GO:0043023 all species →	Molecular Function	ribosomal large subunit binding	Interproscan
GO:0090071 all species →	Biological Process	negative regulation of ribosome biogenesis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25803	MALSU1; mitochondrial assembly of ribosomal large subunit protein 1	-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.