Gene detail

Detailed information of Ppa0G307490 in Paragorgia papillata

Genomic Location: Contig00442:2771045...2788018
NR annotation: XP_028402822.1, doublesex- and mab-3-related transcription factor A2-like isoform X2 [Dendronephthya gigantea]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P83758	Doublesex- and mab-3-related transcription factor 3a OS=Danio rerio OX=7955 GN=dmrt3a PE=1 SV=2
Q90WM5	Doublesex- and mab-3-related transcription factor 3 OS=Takifugu rubripes OX=31033 GN=dmrt3 PE=2 SV=2
Q2MJB4	Doublesex- and mab-3-related transcription factor A2 OS=Xenopus laevis OX=8355 GN=dmrta2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000287 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00751 all species →	DM	DM DNA binding domain	Family	Interproscan
PF13240 all species →	zinc_ribbon_2	zinc-ribbon domain	Domain	Interproscan
PF03474 all species →	DMA	DMRTA motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009060 all species →	Homologous_superfamily	UBA-like superfamily	Interproscan
IPR001275 all species →	Domain	DM DNA-binding domain	Interproscan
IPR026870 all species →	Domain	Zinc-ribbon domain	Interproscan
IPR005173 all species →	Domain	DMRTA motif	Interproscan
IPR026607 all species →	Family	DMRT family	Interproscan
IPR036407 all species →	Homologous_superfamily	DM DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12322 all species →	DOUBLESEX AND MAB-3 RELATED TRANSCRIPTION FACTOR DMRT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0043565 all species →	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0007548 all species →	Biological Process	sex differentiation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Ppa0G307490.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.