Gene detail

Detailed information of Ppa0G307560 in Paragorgia papillata

Genomic Location: Contig00442:2893349...2900803
NR annotation: CAB3976876.1, forkhead box N3-like isoform X1 [Paramuricea clavata]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3BJS3	Forkhead box protein N3 OS=Xenopus laevis OX=8355 GN=foxn3 PE=2 SV=1
Q28G71	Forkhead box protein N3 OS=Xenopus tropicalis OX=8364 GN=foxn3 PE=2 SV=1
Q33BP8	Forkhead box protein N3 OS=Sus scrofa OX=9823 GN=FOXN3 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006638 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00250 all species →	Forkhead	Forkhead domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR030456 all species →	Conserved_site	Fork head domain conserved site 2	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR001766 all species →	Domain	Fork head domain	Interproscan
IPR047119 all species →	Family	Forkhead box protein N2/3-like	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR047404 all species →	Domain	Forkhead box protein N3, forkhead domain	Interproscan
IPR018122 all species →	Conserved_site	Fork head domain conserved site1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13962 all species →	FORKHEAD BOX PROTEIN N3-LIKE PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0043565 all species →	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0000987 all species →	Molecular Function	cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Ppa0G307560.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.