Gene detail

Detailed information of Ppa0G308170 in Paragorgia papillata

Genomic Location: Contig00442:3965784...3992741
NR annotation: CAB3979338.1, pleckstrin homology domain-containing family G member 3-like isoform X1 [Paramuricea clavata]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G308170

ATGGACAATACTGTATTCAAGACACCTGCTAGCAAACGTCCGATGTCTGCTGAAAATGAACCAATTATTCCGTTGCAAGTCAAGTACGTTGAAGCACAAAGTGCAACCATACTGAAGAATCGAAGAGTAACTACTCCTCCGATTTTGAACATCAATGGACCTCAAGATCAACAAAGTCAGGCCCCATTGTTAAACAATGATGTGGATCAGTCTCCAACCTGCGGTGCTGAGCCTACAGATGTGTCTCTTCGCTCACCTGTATTATCCCCGACCAGCGGAAGTCCTAATAACCCCATGATCCCGAACAAATTTCAGTTTGACCCGAATTTATCATATGCTGAAAAAGTTGCCCATGAAATGATTATTACGGAGAAAGTATATCTGGATAACCTGAAGCAGATCATTGATGGATTCTTGGGTCCAGTCTCTAACCATCCTAATCTTGACGTCAGTCAAGATAACATTGAAGACCTATTTATTAATGTTGAAGAAATCTACAGTTTCAATCGTGTTTTACTGGAAGACATGGAAGAATGTCATTACGATCCGGTGAAGCTAGCTGAATGTTTCGTCCTAAAGCAAATAGGATTTGGTGTATATACGAGATACTGTACTCATTACCCCAGGTCAATGGAGGTTCTCTTGGAATGGAATCAAAGAGAAGACACAGCGAACTTTATCAAAACGCAGCAAGAAGCCCTTGGACACACGTTACCACTGTGTTCATTCTTACTGAAACCAGTTCAACGAATTTTGAAATATCATTTATTACTTGGGAATATCGCGAAACATTACAAACAATCTGAAGATGAAGAAGGATTTGAAGTAATACAGAAAGCTTTGGCGGCCATGACAAATGTTGCCAAACACATAAACGACATGAAAAGAAAGCATGAAGACGCCGTTCATCTCCAGGAAATACAGAGTGTTTTGATCGACTACGAGGGACCGAATCTCACGTCATTTGGTAGTCTTGTGTTAGAGGATACGTTTCGTTTACACGGGACAAAGACTGGCAGATACTTATTGTTGTTTGAAAAAGCTCTTCTAATTACAAAAAGAAGAAGCGATGGAACATTCACCTGGAAAGCAACCGTCATGTTTTCAAACATGATGCTAGCAGATTCTGTGTTTCGGGAGCCATTAACATTCCAAGTTATTCCGTACGATGATAGGAAAATCTGCCACACGTTTGTAGCTCGGAACATGGATACGAAACAAGTTTGGCTTTTAGAGTTAAAACGACGTTTGTTGGACAGTTACGCAGCGGCAGTTCCCATGAAGGCAAAGCAAATGATTCTTGGAAATAGTAGGGAAGACTGTGAAAAGGAAAATGCTGAACCAGAAAGTGATCAAAAATCTTCAGTCAGTAATACGAGAAAAGGCGCAAACCAACAACGAAGACATTCAACGAAAGATAGCAGTGCTCAATCTGGCAAGGTTATCAAGAGTATGGAAAATGACCGTCGAAAAAGTAGAGAAGCTGAAGAAAATTTTGATGAGAAATCGCTAAAATCTTTGGATTCAATGAAAAGTCCTTTGAGACGACTTCGTGTATTTAAGAAACGAAAATTTAAAGATCCAGGCAAACCACCGAAAGGAGTGAGCTGGTCCTCTGATGAAAATAACGATGAACCACCATACGTTGATAACGAACCTGTACGCCCTACTGCTGATCAACAAAACCAGGATGCCAAAGTACAACCAGATGAAGAAGTTTGTGCAACAAATCCCAGAGAATGTGATTCTGAACTACAGCAAAACAATATTGAAGACAAGGATGCCGATAACAATGACGTCATCCCAATGGAACCCTCACTGCCTGATGCTACAACGATGACGTCAGTGGCAGGAGAGGACAGTGATGTGTCAGGTGAGGTGAAGTTACATCGACCTGCAGGAGAGAGCTTGCCTGTCAAAAAGAGACGACTGGCCAAAGAGCTTCGAGACAAGTGTAAAGCGATGCCGTTCGGCGAGTTCCTGATCGACGAAGAAGAGCCGACGACAGTACGGGAACACTCGAGCAGCATGTCGGAAACGTACGAGAAATTCACGGAAGAACTCCTCTCCGATCCAACTTCGAACAAAGAACTACAGGATAGATACGGTTTAGTGAACTTGCGAGAGAACGCGCATGTTATAAGGACCAGACGCCTGGGATCCTATGACGAGCACATGGCGTCCGTTGAAGGCAATCTGCGTCGTAACCCTGGTATGGATAACCTGACGGATGAAGCGATGAGCAAGGTGTCTGGAGATACGAGTGTAACACAGACTATGAAGTGCGTCAGCGCAGCGTTTTCCGATATATCTCCAAGTTTCAGTCCAGAAAAAACGCCCACGAGCAGCATTGAGGAATTGGATCTGACTGACCCCGATGAAGAGAGCGATGAATTGGGGGTGTTTCAGGAACAACAGGGTACTGATTGGGATAAGGAGGACGATCCGATGGATAAACAGGAAACGGTGACTAAAGACGTGACAGCAAACAATGTGGAACATGTAGAAACTCCCGAATATAATGGTTACCAGGATAACAATAACGAAGAGCCACCATCCGTCTGGGACCATCTCCAAATCACTGGCGATAGCCTAAGTGCTAGTCCTTCCAATGAAGACGAAGATGTGTCTATCGATCTATTGAGCAACGAGGACAAGAACAGTGCACTGCTTAGTGAACGAAGTAGCTGCGCCGATAATCTTTCCGATTTCTACGACGACCAAGATGAAGATCCTGATTTCCCAACGGACAATTTTAATACAACGTATCAACGGGTCTTCGCCTTGAAGCGCGCGTACAGCGAGGAGAATCTCGTTAGCAAATGCGCGTTCGATGAAGCAATGTTGAACGACGGTTCGAGCCCAGCAATTGCGTCAAAGAGCTGTAGTCATGTTGGACACGGTCAGAGTCATTCACCAGTAATGCGCTCTAAAAGTGCTGAGTATTCGGCTCCGCGACGCTGGTCCAATCCTTACCCGTTGACCTTTTCAGTTACACCGAAAAAGAAAATCGTCATCAAAGACAGTCTTTGGGAGACGATTAGGGAAGATACCGAGATAGGCCACCGTGAAAGATCTCCTTCGCCAAACGATGGGCGGTCAAGTCGGATACGAAAGAAGCCAAAAACACACAGAAAAAGAAGCAGGAAAGTAGAGAGTTGTTCGATTGAAGACAAGTCAGAGAATACCCAACACAAGCCGGTACTCTATGCTTACGCTTCGTTGAATATGGGCGATTATCGAAGGCCGAAAAGTGAACATGAAGGTAGCCGTAATACAGGACTGAGCGGCGAAACGCGAGCCAATTGCGTGGAAGATACTATCACAAAATCTGGCGTCGCAGAGGACGTACAATCGGAAGCAAGCGAGAGAGACACGCAGCTAACAACTGTGACCAAAGTTGATGTATCGCTAAAGAAAAGAAGTGCCAAGCCAAAAAGAGGGAAAAGTGTTGTCAGAGTTGACGCCAATGTCTCTCAAGTGCCTGAGAATTATTTATGTATCGAGACGTTTTCTACGGATGACCGCGAGAGCGCTGGTAACGAGACCGTGAACGGGGCGACGGAAGGCGGGAAAATCGATAGTTTCTCAAAAGTCGAGCGTTTATCGAAGTATTTTAGCAAACGTAAACCCGAGATTAATGATAAGTCGAAATCGGTCGATATGCAAAATCCAAGTAATGTTAAGCAGAGGGTTGAAAAATTCAAGCGGAGTTCTCAAAACGTCCCAAGCTCGGAGGAGAAAGCGACAGTTACGCAAGAATTGAACTCCTTACAGAATATACAGGATCGCATTGGCGATCTACGTCGACGATCTGTGTCCGACGAAACACAAAACGGTGAGAAAGTAAAAATGGAAGTACAGAGTACCCTAACAAAGCGAGTTAATAATGTGAAACGTCTTAAGAATCGTATTGAAGAGAACACTGTAGTCGAGTCGACGAACACTGCAGCGGATAACCACGTTACGGAAGAACAGCTTGGAAACCATTTGCGGACTAGTCTACGCATAAAAGACCGTATCGATGGACTGCAGCATTTACCTGATATAGAACAAGGTATTAATAAGGATAACAATAAATTGGACAAAACCTTTGATGAAGAATTGCGTGGTTGCAAGCGGATCAAAGACCGCATTGAGAAGCTTCAAAAGGAAAAGAAACGAGAGCTTGATTGTGAGCGGGATATTACAATTAGCGAAGAAAATGAAATAACCGAATGCCTTACGTCACCGCGTGAAAATGAAGAACTCAAAACCGTTGTTATTAAACGAGGATGGGTGCAGCAATTTATACAAAAGATCGAAACAGGTTGGTAG

Transcript

Ppa0G308170

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9ULL1	Pleckstrin homology domain-containing family G member 1 OS=Homo sapiens OX=9606 GN=PLEKHG1 PE=1 SV=2
A1L390	Pleckstrin homology domain-containing family G member 3 OS=Homo sapiens OX=9606 GN=PLEKHG3 PE=1 SV=1
Q4VAC9	Pleckstrin homology domain-containing family G member 3 OS=Mus musculus OX=10090 GN=Plekhg3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003579 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00621 all species →	RhoGEF	RhoGEF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR000219 all species →	Domain	Dbl homology (DH) domain	Interproscan
IPR035899 all species →	Homologous_superfamily	Dbl homology (DH) domain superfamily	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR043324 all species →	Domain	PKHG1/2/3, pleckstrin homology (PH) domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45924 all species →	FI17866P1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0031267 all species →	Molecular Function	small GTPase binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23859	PLEKHG1_2_3; pleckstrin homology domain-containing family G member 1/2/3	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.