Gene detail

Detailed information of Ppa0G315400 in Paragorgia papillata

Genomic Location: Contig00460:270829...332384
NR annotation: XP_027053644.1, DIS3-like exonuclease 1 isoform X1 [Pocillopora damicornis]
Species abbreviation PPAPI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G315400

ATGGACAGTTCGACTAAAAGGGACCATTTTATAAGAGTAAAGAATTCCAGAGGACAGTTCACGTCTGTGGTTCGTGAACGGTATTTGAGAGATGATATCTCATGTCGGAGTAACATTTGCTCAACTTCCATTCAAGGTGATAGTTTATTGACACTGTCAAAGGATGTTACCCATTATATTGTTCCAGATTGTCAGGCTGCTTTACAGTATCTCGACATTTACGAGTTTGAAGAAGTTTCTGGTGTAATTTTCATGCAAACATGTGCTCAATATATTGATCGACGACAGCAGCGTAGATTCCGCAAGTTGTTCCAAGATGCGCGACAGGGTTGTGTGGTGTTTTATAATGCATTTCATAAACGCTGCTTTTCTGACAGGTGTACTGGAGAGACTAGTGACGAATGGAGAACAAGGCTGGTATATGAAGCTGCTGTATGGTATTACAATCATTTAGAAGGCAAACTGCCTATCGTCATAATCAGCGATAATCCTGAGGTTCTTGAACAGTTTGGTGAGCTTACTTTGAACGTGTTTGTTATGAGCATGGGTGACTATTTAAAGATGTTTCTTTCAAACCATCCCGATATTTATGATTTATTCGAGTCTTTGGAAGCCGCTATTCACGACAGCATTGTCGAGGAGACTATGAAAGAATACGAAGACTATATACCCTTGGAGGTCTTGGAGACACAAGTAAAATTGGGGCGTTACATTCAAGGAATATTAAAAGTTAATAAGTTTAAACCAAAGGAAGGATATGTTACACCGATGAGAGCCTATCCAAAGACAACGAAAGATTACAAGACATTGATTCCTTCAATGGGATCGAGGAACCGTGCTATTCATGGCGACCATGTTGTGGTTGAAGTTATACAGAAAGTTCAAGAGGAGAAGCGAAATGCAGGTACACATAAGCTTAGAACAGGTGTTGATGGCTCTGCAGAGACTGTTATCCGCACTGGTCGTGTTGTCGGCGTTCTTCAAAGGAACTGGAGAGACTATGTGGCATGCATCGAGGAAGGGGAGACATCGAAGCCAGGGAAACGAGCTGGAAAGGTCCTCGTAGTTCCATTTGACTACCGCATTCCTAAAATCCGCATCAGCACAACACAAATTGAGAAACTCAAGAATGATAGGATCGTGGTAAGAATCGACAATTGGAAGACGGACTCGCTTTACCCTTGTGGACATTTTATTCGTACCCTTGGCCCAATTGGTGATCTAAAAACAGAGTCATCCGTTATTTTGGTAGAGCATTCTTTATTAACTTTACCTTTCACTGAGGCTCAGTTGCGTGAAATGCCTCAAAACGACTCAGAAAATCCTTGGATTATTCAGGAATCTGAAGTGGCTAAAAGAAGAGACCTTAGAGATACCTACCTAATATTTAGTATTGACCCGAAAGGTTGCGAAGACGTTGATGACACTTTGTCTGTTCGGGAGTTGGAGAGTGGAGATATAGAGCTTGGGGTTCATATCGCAGACGTCACTCATTTTGTAAAAACCAATTCATTTACAGATCTTGAAGCCCGGTCAAGGTCGACAACTGTCTATTTAGCGGATAGACGATACGACATGTTACCCGCCAAGCTCCGGAAAAAAGTGTGCTATGCCTGTGGCCTATCTACTCCCGCCATACTTATCGCCGACCTTTGCTCACTTCTTAGCGGAGTTGACAGGTATGCTGTGAGTGTCTTATGGATTCTGGATAGCGAGAACTACGAAGTGAAGGATGTTTGGTATGGAAAGACCATTATTCGTTCGCGTTATAAGCTGTTTTACGAGATTGCCCAAGCCATTGCGGAGGGGAAAACGAGCAATAGTGAATTAACTGAAAATGTTCCTGAATTACAGGACTGTACGACTGAAAGCGAACTTAATACAAGAGTAGAGGAATTACGTTGGGCAGTTATAAAGCTGATGGATATTGCAAGGAAATTAAAGTCGAAACGAACAAGTCAAGGTGCTTTGGAGCTTGAAGGTGTGGAAGTACAAGTTCAACTTGGCGACGAGAAAGAAATTGAAGATTTACCTCTAGAAGTCCACGAAACTATTGCTGAAAGCATGATATTCGCTAACCACTGGGTTGCCAAAAGGATCTTAAAGAGTTTTCCCAACTCGTCTCTTCTTCGTCGCCATCCGTTGCCTCGCCAAGAACAATTCTCGAACGTTATTACTTGCGCTAAGTCAAAAGGATTTATTGTAAATACAAGCTCCAACAAATCCTTAGCGTCATCATTGGATAGTTGTATGGATCCTCACGACCAAACTGTCAATAAGATAATACGATCTCTTACAACCCAAGCAATGTCAAATGCGGTGTATTTCTCCACTGGAGCTGTTTCTCAAGATCAGTTCTTTCACTATGGACTTGCTCTTGACAAGTATACGCACTTCACATCACCTATAAGAAGATATGCTGATGTAATAGTTCATAGGCAACTAATGGTGGCTATTGGATATGACCAAGGTGAAACTATGTTTTCAAACCAAGAACTGCAAGAAGTGTCAACGAATATGAACTCAAAGCATCGAGAATCTCAAAATGCTCAAAGAGACTCAGTGCAGTTGTTTCAAGCTCTTTATTTCCGCGATCTCGACGAGAATGACGAACGTCGCTTTGCTGAGGCTGTTGTATTCCAAACACGTGAAAATGCCGTCCTCGTGTCTATTGAAAGCTGCGAAAGGACTGGACGGGTCCCTTTGAGTACGCTTACGAGGGATGACCTTAACGTGACAGTCAAGAACAGTTGTGGAACTTTTTGCTTTCGACTGTTTGATCATTTAAAGGTACGGATTGGTGTATCTCATTCACGAACACATGGCGACTCAGTTAAGCTTGAGCTAGCTTCTTGCTATCCTTATAAGTTGTCAAAATCATGTTCCATGAGCGAGGAGGAAATCAAGCTTCAAAAGAAACGGCTTATTGAGGACGTAAAAGAGTACAACGAAGGAAACAGCGCGAAGTCTGAGGACGAGAACGATCTAAGTGACTTTCGTCAATTGACATCGCTGTTTGGTCAAACCCACAAAGACGTGAGTCTCTACTGCCTTCTTAATGACTTTAAAGAGCTCTCCTTGCGTGAATAG

Transcript

Ppa0G315400

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8C0S1	DIS3-like exonuclease 1 OS=Mus musculus OX=10090 GN=Dis3l PE=1 SV=2
A0JN80	DIS3-like exonuclease 1 OS=Bos taurus OX=9913 GN=DIS3L PE=2 SV=2
Q5U2P0	DIS3-like exonuclease 1 OS=Rattus norvegicus OX=10116 GN=Dis3l PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001458 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00773 all species →	RNB	RNB domain	Domain	Interproscan
PF17849 all species →	OB_Dis3	Dis3-like cold-shock domain 2 (CSD2)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR001900 all species →	Domain	Ribonuclease II/R	Interproscan
IPR050180 all species →	Family	RNR Ribonuclease	Interproscan
IPR022966 all species →	Conserved_site	Ribonuclease II/R, conserved site	Interproscan
IPR041505 all species →	Domain	Dis3-like cold-shock domain 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23355 all species →	RIBONUCLEASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0004540 all species →	Molecular Function	RNA nuclease activity	Interproscan
GO:0000175 all species →	Molecular Function	3'-5'-RNA exonuclease activity	Interproscan
GO:0000177 all species →	Cellular Component	cytoplasmic exosome (RNase complex)	Interproscan
GO:0016075 all species →	Biological Process	rRNA catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Ppa0G315400.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.