Gene detail

Detailed information of Ppa0G315700 in Paragorgia papillata

Genomic Location: Contig00460:818884...929244
NR annotation: XP_028406945.1, spatacsin-like [Dendronephthya gigantea]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G315700

ATGTTTCCAAACTTAGAAGTTCATTACGAAGTTCGATTTGAAGTTCGAATGTTCGATTTGAGGTTCAGCTTTGCGCCATTCTTTGGCTACGCAATTGGTAAACACAGCGTCCAATTCACAAGTCAGCTTTTACAAATGAGTTTTGATTACGTGAATGGCTTAATGCAAGATGCTGTGAATTGTATCGAACGACAACTAGGGCAAGAATGTGACCGTGGAAAGATCCATGAAATTTTATCCTATTTGACGGAAAAAACAATGGAGTTACGTTGGTTTCTCTATGGCATTCCTCCGTTCACCGCTGATGCAAGGAGCGGTAGTACAGGATCTGCGCGTAAAGAGAAAGACAGCGGCAGTTATGTTTCTTCTGAAACGCAGGAAATTATTTTCAAGAAATGGTCTGGTATGGACGATAAGGATGTGATTGGAGATGCTATTCTTAGCTGTCGTATTCCTCTTGCTCAAGTGTATTTTTTAGACAACGGCGAATCCTTATCGGCACACGATGGCTCTCTTCGTTACATAATGGAATCAGGAATGAATCTTGTTCTGGATGTTTTGGCAAGGAAGGATATTGCGACCGCCATAGCAATGTTAAAGAACATGGGAGAAGACGTAGTCGCGCTACTACGAAACATATGCTTGAAGACTTTTGATCGCTCGTTGAGAGATTATTTGATTGAGCAACTTACCAGTTGGGATGAATTAAAAGAAGAAGAGATCCGTGCTTTCAAGTTTTTGACATTTCTTGAAAGCATTTATGACAACCAGTCATTTGAAAGTTGCCAGATTCGAAAGTTACAGCACACTAAGCTCGAAGAATTTAATGATCTTGGCTTACTCCAAAAGTCGTTTGATCCAACGTCACCGAGTACAAAAACTGGTTTTCTGAAAACAGGAAGCATTGCCCCCCAATACCATGTCTCCATGGTTTCTCGCGTTTCTGATGGTTACTGCGAAGTTTTGATGGATTGGGTGATTGGATGGGATCAGGAAACAAGAGAGCGTGTCCTGTTGGAAAAGTTTTTCAGTGACGAGAAAGCTTTCCAAAAAGAGATTTGGAACATGGTGTCAGGAAAACCGTGCTGGCAATATTTGAAAGCTCATTCGGAAATCGGTCAGGTCATTGATTGGATTTCCTCATCTTCGGAATCCTCGCAAGATTCACAACTGCTTCCAGCTCTAACTTTAGAAGCACGCAGTGATCTTTCCGAGTGCAGTTGTTTTCTTATTGAAGTAATCTTGGATGAGCTAACGAGAAATGGACTTTACTCCAAGAAACTGCTCACGAATTTTCCACTGCTACTGCGCCATCTCTGTCGGACAGGAACACTTTTCACCAAAGCTCATCCTTTGCATGGCATAACCAGCAAGGATTGCCAGGATCTAGAACAAACTCTGCAAGAAGGTGAAACTGTTTATTCACTCAAGCTGTTTCACAAGGAGATGATGGAGTATTGCTCCAAGCACAACTTCATGAATCTTTTGTATTACTATCTGGATTTTTACAGACTGTGCCAAACCATAGAAGAATGTGAGGAATTAGTTCCGAAACAGATACACCAGGAGGTAGACATGTTGCTCAAATTTCGTTTGGCTGGTCTTTTTCCTTCAGATCTCTCTGTTATTTGCTCCATGAGTTTTTCCAACAGCAGTGCTGTCTTGAGCACATCCAATCCGTCTTTGATCAACATGTTGTCTAATCATCGTCCGATTATGGCTATTGCTACCTGTCTCTATGCACCAGTTGATTTGTCTCAGATACTCCAACCGAATTCGGGAGAAGTATTGGGTGATATATGGCAATTGGACGAAACGTTACTAAGAAGCACTCTGAGTTGTTATCCCAGGCTTTGTTCTGCTCTTTTTCCTAGAACAGGAAACCAAAAGTTGAGTGAGGATCCAGATATCACGCTCTATAAACTACTTCAGGGTAACTGCTCGTTTGAAATATCCAGTCTGTTTGCGTGGCAATCAACTAATACATTAGCCACAAGAGGAGGGATATTAAGTGACATGCCACATTTTTCACAGAAGACCTTGGTTGAGAAGTTTGCACACAAAGAAACGCTTACCTATGTGTATTTTCTCAAACATGGTCGTCCATCTTTTGCTTTCATAACCTTCATGTCAAAATATCAACACCGAAAATATATTCCCAAAACAAGTATATCTAAAGCAACGAATAAAGCCTACCAGTTGGCCATCACTCACTTTGGAAACAATAGGATTGCTTACAGTTGTGTTGCTTTTCTCGAACTACTTGGCATTGACACGTTATTTCTTAGAATTGACCTTGAATCTGCAAGAAGAATTCTACATCACGGTAACAAGGACGAGCTACAGTGCCAAACCGCAGATGAACTGAAGAATGCTGTTGTAGTTAAATTACTCAAAGGTTCAAAAGACAGACAGTACAAACCAAAGGCTTTGATAGCAATTCTGGAAGATTCGACAAGAAATCTTATCAGCAAAGAAGGTTTGGACCGGTCGTCGAGAGAAGCCAGCCAGTTTTGGTCATTACCGATCATGTTTTGCCGTTCTCACAATATGACTCTTACTCCTGCGTTTTTAATCGACTGTGCGAAAGCAGATAAATGGCTGGCATTCTTATGCCATGCTCAAGCAGCTCAGTTCCCTAAGAATCAGGTCTTGAGCGTCGTTCAACATTATTTTGAGACCAACAACCTGAAAGAGCATCTACACCAGGCGCTGGTGAACGTCGTTTCAGTGAACTCAAAGGAGACAGGACATGCGAGAAGAAAAGGAAAGTTTCCACCAACGAGAAGAGATGTTCGATCTCAATATCTTTCTCGCGTTATTGGAGCTTCGAGCTCACCAGTTAGTAAAAGCGATCCCTTGGCTAAAAGTATAAAAGAGAACACTGAACTAACCAACGTGCTGTTGGAAAAGACTGAACCAGCACATGACCTAGAACCGTCAGAGAAAGATGAACCAAGGCATGATATGGAATTGGAAATTGCAGATATCAACCCTGAGACTTCTCCGGATAATTTATTTGACGTACTTTCTCTCTGTAATGAAACAACTGAGTCTTGGCGAGCCATTCTTGTTCACAGTATAGCCTTGAAGCGACCTCTCTTTGCTGTTCTTGCGGCATGCTATAAGGACGTTAATCTTGTCGACTGCATGTGTGTATGGCTGTGTTCTGTTCATGACAAAGAGATTCTTCATCCAGCCCTGACCAACATTGCAGATATTCAGTGCTGGACGTTGGATGATCTTCAATCTCTCATCCTAACTATTTCTAAATTTGGGGCAGACTTTGCTCATTGCCTGGCAAAGGCATTTTATTTATTTGACCCAAACAATATGTTGCTTCCGTTAATGCGATTTTATGAAGCTTTCTCAATTCATATGGACTTTGTAGCTGCGGCTGATCAACTTTCCAACTTCGTTCTCCATCACAAGTCTGTATTGGTTAATGAAGACCTGCAGAGTCAAATGGTTATTGGAGATCTTACTTGGTGCGAGAAGATCTCCGATGGTGTGGTACAAAACATGCTAAGGTCGTGTCAAACTATGCACACGCAAGTTCAGCTCTTGCGCTTGTTATGTCACAGTAGATTTGGCAATGGCTTTTCAATTAAGGTGCCAGATTTTAAGAAACTCTACAAGATTAGCCACGTACTTGAAGAAGGTTCGGTGTTCGCTCAGTGCGTGGACCTGACTTCTGATGAATCCGAAAGAGAGAGAGTACTGGAGGAATTGTTACAGCAACAGAGGTTTACGGAAGCTCAGGATTATGCGACACTTGTGGACATACCCAGCGATAAAGTTAGTTTGCAGCAGATTATTAAAAAGAAGAAAGACATCCAAGCTTCACGTCTTTGGGAGAACGAACGAGAACGAATTGCATTTTGGGAAAGTTGCGATCAGTACCTGGAAGAGCAAAAATGTGCGACGGCTGGACACTTCTTTGAGGAAGAGTCTACTGCTATTTCGTTATCGTCAGCTGAAAAAGCTACATTGTTATGCCTGGCGTTTAATTGGTTTTCAGGACGAAGGAACAGTGGCAGGACAACACCAAAATCTCTGGCTGATCAAGCAGAACTAGAATGTCAGATGTGGTTGTGTATAATTAACGACAGGGTAAAGAGTGCAGAAGAGTGCCGCCGTCGATGTGACTGCGATACCGCCGGCATACCGACGCAATCTGTGCAGAAGGTTTTAAAAGAAATCATAGGAGAATTACTAGACGAAGGACAGATTACTCAGGCTCGACGACTATCTGTGCTTTTTGGTCTGTCAACGACTGATTTAGACATTGTCTTGAGTTGCATATTTCTTGCGCAAGAAATCGTGAGCCCAGAGTCCTTGGAGGAAGATATCAAAGCTTTATTGACGCCCCGAGAGAGTTATACGTTATCCAATAGTTTGAAGTCAAGTGGAAGTTTCATTGAAAGCTTAAGCCAAAGCCAGAAGTCTACAGATGACGGCCTTAATAAGTCAACTGAAGATGGCATCTCTACATGGACTATGGTTGGAGATAATTTAGCAACAATGGAAAACCTGGCATCGTCGTGTCAGTCAGGAAGGATATGTTGTTCACGAGTTATAGTTGCCTATAAAATATGCCAGACCTCGGGGCTTGTATTTGAGAAAGTGGTTGCTACCGACCCGTTTGATCTTTTGTGCTCTCTACTTGGCTCTTCCTTTGATCAGCGTTGCCAGCTCGCTGCCCAGTATATCAAGTCTTTTAATTTGGATTCCAATAAGATTGCTCAGTTTGTGGCGAAATCTGTCTCAACGTCGCTGAACGTATATACAGGATCAGTACTTGATGACAAAGTATTCATTTTCAACCCAGCTTCAAGAGAAGACATGAATAACGTCATGAGTTTGGCTGAGGACAGGCTGGTTTTGGGCGGCTTTTTGTTTCAAGAAGCATTGTTGTTGGCTAAGCGAAGAAAAACAGCAACGCCAAGTTCTTCAGCCCTTACCATGGAAGTGGAGCTACTGATCCACGCCCATCATTGTCAAACGTTAGCTTGTAATACAGAAGGAATATCATCTATTTTAAAGCTGGCTCAACTTTGCACCCGTGCCTTGACGGATGCTAATGAATATCAGTTAATGGTTCGACTTCTAACCGGAATTGGAAGGTTTACAGAAATGACATATATTTTTCAAGCTTTAATGGACCATCACCATTTCGAATTACTGGTCAAGAAGGGTACTGATAACGAAAACAAACTGAAAATAGCTCTGCTTAAGTACTTGGACAAGTATCATTCCGAGGACACGGAGAAACATCTACTTGTGGCTTACCGCTTTAACATGCACCGCGAGGTCGCAATCAGTCTGAAAACCTCCGCTGATTTGCAAGTGAAGAAACTGGTTAAACGGGAGTTAAGTGCAAACAGTGAAGTACGTTCTATGCTGGTTTCCATCGCGCAATCCTATACCTATGCCATGGAAAATTTTAAGGAGGAAGGTTGTCTTTTGCAGGCACTCGAATGTGCAAAGAAACACCGACTTGTCGAACTGCAAAAACATCTCCTTCCCACTGGCATGGTGATTTTAGATTTAAACGATAAGTCTCTTGGCGAATTTCTAGCCAAGTACAATAACTTTTTCGAGCGTTCACTGGACACGTGGGTCGAGCCAGTGTTTAACCACGTGATACTTGGTGGAGACTTTAAGTACTTCAATGAGATTTGCAGTGTTTTTCAAGTACCAACCGCCATCTTGTCTGAGTTGGTTGTGAGATATCGGTCCGAACTTCAGCGTAATTCCTCAGCTATTGTCCATATGAAGAAAGTAATGCGTTTTGAAAGAGACATTCTTTCTCGTTATAAGTTAGCCGTTGAGCTTGGATATCGCGATGAAATAGAAAGCATAAGACAAAGCGAAGCTGGAGCACTTGTTCGGGACAGACGTGAGTAA

Transcript

Ppa0G315700

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96JI7	Spatacsin OS=Homo sapiens OX=9606 GN=SPG11 PE=1 SV=3
Q3UHA3	Spatacsin OS=Mus musculus OX=10090 GN=Spg11 PE=1 SV=3
Q55GD2	Protein DDB_G0268328 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0268328 PE=4 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002279 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14649 all species →	Spatacsin_C	Spatacsin C-terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028103 all species →	Family	Spatacsin	Interproscan
IPR028107 all species →	Domain	Spatacsin, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13650 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19026	SPG11; spatacsin	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.