Gene detail

Detailed information of Ppa0G317330 in Paragorgia papillata

Genomic Location: Contig00461:2586963...2612990
NR annotation: CAB3983086.1, c-binding -like, partial [Paramuricea clavata]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G317330

ATGATTTTATGGGCAAATGCCAGTACGTTCTTTCTAAAGACTTGGCAGGCTATTTTGAAGTATTGCAAGATAATGAAGCTGTATATTTGGAATAATTTTTGTGGGACAACAAACTCAGGTGGATGGTGCTATACTCATTATTCTCACGAGTTCGCTGTCCCCCAATTATTTATACAATTTAATTTATATCAATGCCTCTACATTAATACGAGTTCACCGTGCTCCAGCGCTCCTTGCTTCAATGGTGGTACCTGCGAGAACGAAGGTGAAACATTTAAGTGTTTGTGTCCTCCAGGCTACATTGGCTCACAATGCGCAAACGAAGTGTATATTTGGAATAATTTTTGTGGGACAACAAACTCAGGTGGATGGTGCTATACTCATTATTCTCTCGAGTTCGCTGTCCCCCAATTATTTATACAATTTAATTTATATCAATGCCTCTACATTAATACGAGTCACCTAACAACTATGGAGGATTTCGACGACATGCTGACAAGGAACAATACGTACGTCAACGAAGCGTCGACCTTTGGAAATTCTTGGAAAACTAACGACAGATGCGAAGATATTGGTCCTGGAATTCACCCATGTGTGCGTTTCCCAGCAAATGCAGATTTAGCTAAGAAAAACTGTTCGTATCCTCTTATTTCTACTTATAAAGAGGAGAAAAGATGTTCTGCAACCGGAGATCCTCACTACACGACATTTGACGGTAAAAGATATGATTTTATGGGCAAATGCCAGTACGTTCTTTCTAAAGACTTGGCAGGCTATTTTGAAGTATTGCAAGATAATGAAGCGTGTGGAAATGGACAAGTGAGTTGCACAAAATCGTTGACCGTGAATGTAGCAGGCTTGAGTATATTCCTTCAAAGAGGTGGATCTGTGGTGGTCGACGGTACTGAAATTTCATTCCCTTACAACAATGCAGGTAATTACAGTTCACCGTGCTCCAGCGCTCCTTGCTTCAATGGTGGTACCTGCGAGAACGAAGGTGAAACATTTAAGTGTTTGTGTCCTCCAGGCTACATTGGCTCACAATGCGCAAACGAAGTGTATATTTGGAATAATTTTTGTGGGACAACAAACTCAGGTGGATGGTGCTATACTCATTATTCTCTCGAGTTCGCTGTCCCCCAATTATTTATACAATTTAATTTATATCAATGCCTCTACATTAATACGAGTCACCTAACAACTATGGAGGATTTCGCTCCTTGCTTCAATGGTGGTACCTGCGAGAACGAAGGTGAAACATTTAAGTGTTTGTGTCCTCCAGGCTACATTGGCTCACAATGCGCAAACGAAGGTAAGATTGTGAAAGATGGTGTTTGCGATTTATTTCTATACAGGAATACACAAAAACTGTTCGATTTTCACAATGTTTTTTTTGATCCAAGCTTTTATTTATTATGTTCTGCAACCGGAGATCCTCACTACACGACATTTGACGGTAAAAGATATGATTTTATGGGCAAATGCCAGTACGTTCTTTCTAAAGACTTGGCAGGCTATTTTGAAGTATTGCAAGATAATGAAGCGTGTGGAAATGGACAAGTGAGTTGCACAAAATCGTTGACCGTGAATGTAGCAGGCTTGAGTATATTCCTTCAAAGAGATATTGGTCCTGGAATTCACCCATGTGTGCGTTTCCCAGCAAATGCAGATTTAGCTAAGAAAAACTGTTCGTTGCTAAAGGAATCTCCGTTTAATCAATGTAATGGATCCGTTGATCCAGATGAAGGACACATAAAGAACTGCGAATTTGATGTGTGTGGATGTACGAATAATCCAGTGGCGTGTCTTTGTGAGGCATTTGGATCATATGCTGATGATTGCGCAAATGCTGGAATCAATATCGATTGGAAATCGCTTTCTCAATTCAAACAATGTGTATTGCAAGATAATGAAGCGTGTGGAAATGGACAAGTGAGTTGCACAAAATCGTTGACCGTGAATGTAGCAGGCTTGAGTATATTCCTTCAAAGAGGTGGATCTGAGAAAAGATGTTCTGCAACCGGAGATCCTCACTACACGACATTTGACGGTAAAAGATATGATTTTATGGGCAAATGCCAGTACGTTCTTTCTAAAGACTTGGCAGGCTATTTTGAAGTATTGCAAGATAATGAAGCGTGTGGAAATGGACAAGTGAGTTGCACAAAATCGTTGACCGTGAATGTAGCAGGCTTGAGTATATTCCTTCAAAGAGGTGGATCTGTGGTGGTCGACGGTACTGAAATTTCATTCCCTTACAACAATGCAGGTTCACCGTGCTCCAGCGCTCCTTGCTTCAATGGTGGTACCTGCGAGAACGAAGGTGAAACATTTAAGTGTTTGTGTCCTCCAGGCTACATTGGCTCACAATGCGCAAACGAAGGTAAGATTAAAAACTGTTCGTTGCTAAAGGAATCTCCGTTTAATCAATGTAATGGATCCGTTGATCCAGATGAAGGACACATAAAGAACTGCGAATTTGATGTGTGTGGATGTACGAATAATCCAGTGGCGTGTCTTTGTGAGGCATTTGGATCATATGCTGATGATTGCGCAAATGCTGGAATCAATATCGATTGGAAATCGCTTTCTCAATTCAAACAATGTGGTAAGTGTATATTTGGAATAATTTTTGTGGGACAACAAACTCAGGTGGATGGTGCTATACTCATTATTCTCTCGAGTTCGCTGTCCCCCAATAATTTATACAATTTAATTTATATCAATGCCTCTACATTAATACGAGTCACCTAA

Transcript

Ppa0G317330

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2PC93	SCO-spondin OS=Gallus gallus OX=9031 GN=SSPO PE=2 SV=1
Q9Y6R7	IgGFc-binding protein OS=Homo sapiens OX=9606 GN=FCGBP PE=1 SV=3
Q9Y493	Zonadhesin OS=Homo sapiens OX=9606 GN=ZAN PE=2 SV=5

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001729 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08742 all species →	C8	C8 domain	Domain	Interproscan
PF00008 all species →	EGF	EGF-like domain	Domain	Interproscan
PF00094 all species →	VWD	von Willebrand factor type D domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001846 all species →	Domain	von Willebrand factor, type D domain	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR014853 all species →	Domain	VWF/SSPO/Zonadhesin-like, cysteine-rich domain	Interproscan
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR050780 all species →	Family	Mucin/von Willebrand/Thrombospondin superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11339 all species →	EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0001568 all species →	Biological Process	blood vessel development	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0031012 all species →	Cellular Component	extracellular matrix	Interproscan
GO:0045765 all species →	Biological Process	regulation of angiogenesis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Ppa0G317330.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.