Gene detail

Detailed information of Ppa0G317930 in Paragorgia papillata

Genomic Location: Contig00462:363665...368191
NR annotation: CAB4020274.1, 2 -5 RNA ligase [Paramuricea clavata]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G317930

ATGGAAAGTAGCAACAAAAAGCTGATTTTTATTCTTCTCGGTCCAAGTGGTAGTGGCAAGACAAGCTGTGGCAAAGCAGCAGCTTTTGACCCTGCTTCAGGGGCTCTTACAGAAGGTAAAGTCATGTTTCTATCAACTGGGGATAAACTTCGCGAGAAAGAAATTTTGAGTCCATGGCAAGAACCCAATATGAAAATAGTCAAAGCATTCTGCCACAAATTGATCAGCGAAACGTTTGATGCTTTCAAAGCTTCAGCAACACATCGCATATTGCTTTTAGATTGTGTGAAGGATCTGCGTGATGCACAGTATATAACCTCACAGGCTAAGAAATATGGCTGTGACATGTCCCGAGCATTTGTGATGGATGTTGACCCCACAGAATTACAAGAGCGCTGGGAGAAACGAGGAGAAGCAAGAGACATATTTCGTGATTCAGTTGATAGTTATCTTAACGACTGGCGTAGGAAATCTAATGACGTCTTTAATTACTATAAGAAAATGAACATGCTGTACTCAATGCCGATAACAGCTGATCTACCAAGCTTGATGCTGTCGGAACTAGACAAATTAAGCAAACTAAGACAAAGACGAATCTTCAAAGATGACAACCCTGCTATTCGTTGCCCAAACAATGTTCGCTATCTTCTTGTTGATTCTGTAAAGATAAACAATATTTACACTTTACTACTTTCCATTTTGAATGTCACTTGGTTCGATTTTGCACTTCCAGCTTCTTTCATCCATTGCAATCGAGATGTCATGTGGGTCGCTAATCCAACCAGATACCATGTGACCTTAAAAGCAAATGGTGTCCGTTTCTTACTGGTGAAAATCCATGAAGAAACTTTTTTGATTAACAGAAAGAATGAAGTTTACCCCTGTCTTGTTGACGAGGGAACTGAATTACCCACCAATACCGTACTAGACGGAGAACTCATGCCATCTACTTCCATTTCCGATATTGATCATCCTGGCAACATTACTCGGTTGGAAACAAATGTCTTTATGATATTTGATGTACTTGCTGTGTCTGGTCAAGTGATGTGGAAATACCCATTTAGTGAGCGATGTGAAATCCTTAATCAGCTTTCTATCAGCAAAGATATAGTATCTGTTATGGAGCTGGCATCTGGTGCTGTTCACTCAAGTGCTGACAGGAAATTGCAGACTGTTCCTGAAGAAGAAAACATCACAGAGAAGCTTAAAGTAAATGTTGTTATTAAGGAGCATCGCCAATCCACTCCTGATACAATACTTGCCTGTCTAAGCTCTCACACGAGCAATATTTTCTATCCATACGATGGTTTGGTTTTCACACCAGAAACACCATACATCTTTGGCTTTGATCCCTTGTTATTTACATGGAAACCTGAAGAGTTAACTTGCTGCAATATCGCTTACAAAGATCTGATGTCAGGAAGACGACACTGCAGTGGCATTTCTTCTTTTGGTGATGGCATGAAATATTACCCAGAGTGTGGAAATTATGGTCAAATTATCGAGTGTGAGTGGAACTACATGCGTGGTTATTGGAATCCTCTTTTTCCACGCCATGACAAAGCAACACCAGATATGGATGAAACACTTGATCATGTTGAAAGAACTGGTTGTCCTTATACTCAAGATGATCTGGTTCCAGATATCACTCAAATTCTAAAGGAGTCTGGAGGAGAAGAAGAGAACCTGACCACTCAAAGCACACACTCCTCTCAGAATCATTCAACGGTTAACTATTCTTTTGACGAACTGTACTCGCAGATTAACGAACTAGTCGAGCTTGATGATGTTGAAAGAAAGATTGACCCATCCACCAACTTGGAAATCTTCAATTATTACAGTTTAACTTCTTGTGATCATCCAATAATTCGCTTTTGCAAAGGTCTTGTTCTCCATGTGGAATCAAAAACCATTCTAACGAAACCATTTGTTCACTTTTTTCAAGATTTAGGTGCAGATGAACCTAATCCCCAAGAAGTGGTGGAAGCTACTGTTAAGTTCGATGGATCACTTGGCATTGCATTTCGGTGGAACACCGAAGTAAAGGTTACATCAAAGCGTAGCATGGATTCAGAGCAAGCTATGTGGGCCAAGCATTGGATTGAAGACCACTGCAATCCTACCAGTTTCAAAACGGGGTACACTTACCTTTTTGAGATTATTTACAAGGTAAATACAGTTATTGTAACGTACCCTTTCCAAGGCCTTGTTCTGCTTGCAATCACAGATGAGAATGGTCATGAGTTGTCCTACGATGAAGTATTTCGCTGTGGTAGGATCGCTGGGTTCTTCATGGTGACACCACGAATCAGTGGTCCTTATTCAGAGGTATCCTGGTATTGTGGTGGAGCAGTCTTGGCCAACGGGGCAGCCTCACGCACTGATCCAGCACTCCTCTCGGGTGCATTGCCAACAATGTCACGGCAACGGGAAGGATGGGTGATAAAGTTCAACGATGGAACCAGGCAAAAGATTGTTTACAATTGGTGGGAAAATGTGTCGAGAATTACCCATCTGATTCACCCGCAGATCGTATGGTTGCTTGTAAAGTATGATAAAATTCAAGCCGTGTTTGGCAACGTTCCAAATCACATTCGAAGCGAAGTCCAGAGCATGATGAAAGCGATAGCAAGACAGTTTGAAGAAGTGCTCAAGCTGGTCGATCAATGTTTGACTGGAACTCCTGGTAATCAAACTCAAGCTTCCAAAATGTCCACGAAGTACATCAACGAGTGGTGGGATCCAGAGATATCACCAGAGGAATCAGAACAGGAATCTGAAGAAGCGTCTTTTTGTTTACGGGAATTGTTTGAAAGATTTACTTTAGAAGGTGACCACAGTACCGAACCTAACCCTAACTCTATCAAAGATCAAGTCGGTAATAATACTGAAAATCATTGTGGCCATTCGAACGATGATGGTGATGACAAGGAAGGTTTACAAGCTGCAGTGAAGGAAACAAATGAAAATAGCGGCAGCTTATTAGAGCTCATTCGCAAACTACAACCTTATCGTCGCAAGTCTAAGATAATTCTGCATGCTTCTCAATTAGATCATTTTTTGGATGGGGAAATACACATTTCACCATTTTACAACGCGTCTAAACGTAACTTTTTTAGATTGCCTATTTTGGAATACATCAGACCATCTGAACCTGCCATCAAAGGCTACGAGCCCAGTGATAACTGCAAGCAAACGTGGAGCAAAGGATGGAAAACACTTCAAAACGACCGAAGAGAATTAATTCAACAGGTTCTACCAGAGAACCACCAAGCTCCTGTATTTTTGCAAATGCCGATTGAAGTCATACTTTTGTTTTTGGATTTTCTCGACGGTTCAAGTCTCGCAAAGTTGTCCAAAGTGTGTTGGCTACTGCATCAGATTGTGATTGAGCAATCGAGACGGTCGTTGAGAATAAAGATTGCCAAAGCAAAGGAACAGCATGAAACGGCGAACAGTTATGATGATGATGATGATCGTGGATAA

Transcript

Ppa0G317930

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0013091 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00646 all species →	F-box	F-box domain	Domain	Interproscan
PF01331 all species →	mRNA_cap_enzyme	mRNA capping enzyme, catalytic domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001810 all species →	Domain	F-box domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR051029 all species →	Family	mRNA Capping Enzyme and RNA Phosphatase	Interproscan
IPR036047 all species →	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR001339 all species →	Domain	mRNA capping enzyme, adenylation domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10367 all species →	MRNA-CAPPING ENZYME	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004484 all species →	Molecular Function	mRNA guanylyltransferase activity	Interproscan
GO:0006370 all species →	Biological Process	7-methylguanosine mRNA capping	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Ppa0G317930.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.