Gene detail

Detailed information of Ppa0G319480 in Paragorgia papillata

Genomic Location: Contig00466:696619...726071
NR annotation: XP_028409364.1, transcription initiation factor TFIID subunit 3-like [Dendronephthya gigantea]

Gene Structure

More details in Jbrowse

Sequence

CDS

Ppa0G319480

ATGATGGAGAGCTTTAATCGTCAAGTTTTACGTGTTGCTACCACTCACGATGCCGACTTATTTCGATGTTATGCCAGAGATCGATACTTAGAGGAGATAGGAAAAGTTGCTTATGGTTACACGCAGTTGTGTAACCGAACAAAGCCCAATTTGGACGACTTACATTTAGCCTTTCAAGATACTGGTGTGGCTGTTCATGAACTGGAAAATTACGTGGCCCAGGTAGATTCAGTCCAATTTATTCATCCTTTCACCACGTATCCCAGGTGCAGGCCCTGCCGGCTACAACACCCAAGCAAAGGAGAAATTGTAGACCGAGCGGACTTCTATTCTGAGCATCTGCCTCCCCTTCCAAAAGTTTATGAAGAACCTACATTTGAAAGCGAAGAAAACGCTCCAGAGGAAAGTGCTAAAGTTCTGAGTCAGGAAGAAAGTGAGAAAATGAAAACGAGTCCTTTAAAAGAATCGAATCACGTGGTTGAAAAGAGTGAGAATTTCCCCGCGAAACGCCTGCACGATGGCCCTGTGCGGGGTTTTCCTGAGAGTAAGCGTGCAAGACTGGATATCCCCCCGAACATAATTTTCGAGAAGAAAGAAAACCTCGATAATACGGACGGCGAGTCTTTATCCCCAGCTACACCTGTTTCACCCTATTTACCGCAAGAGATCCCAAAGGTTCCCGACGAACCCGCGAAAGAGGCGATCACAGTGAAAGTGAAAACTGAACCGAAAAAGGTATTCAGCCCAACAAAGGAGTTAGTTTTATCCCTTCCAAAAATCGCCCCACCCGATCACAAGAAGATAAAGTCGGAGACGTCCCCCAGCTCCAAGAAACCAAAGATAAAGGCCGAGAAGTCGGCCTCACCAAAAGTTCAAAAGAAATCGCCTTTGTCAGGTGCTCGAGCCGAGTCTCCCTTGTCTGGTCGGAAGATTCCAAAGGCGGTGAAAAAATCGCCTTCGCCGAAGCTGAAGTCGCCTGTCAAAGCCATATTGCCAGTAAAAGCTATGTCACCAGCTAAAACCATGTTGCCTGCTAAGGCCACGTCGCCTGCCAAAGCTATCTCGCCTGCCAAAGCCATCTCGCCTGCCAAAGCTATCTCGCCACTGGTCGACAAATCACCGCTCGTCGTCAAGAGGTTTCCAGAAAAATTAAGCGTAAAACAAGAATCGCCATTGACGTCACCCGTGAAAGGAGGTCCTTCGAAGAAGCCTTCGCCAAGCGTCACGGTGAAGAAGGAAATTACATCCCATCATGAGGTGAAACCTCCGGAAGATAAGCAGCCCAAGAAGAAGAAGAAGAAAGTTACGGATGGCTTAAAGTCTCCACAGCAAGCAAGTGATTTTGAGAGCGAAAGCTTGAGTACGCCGAAGTTGATGATTAAACTTTTACCGAAATCGGATGTAGGTGGGAAATTGTCGAAATCGAGCCCGGGACAGTCCAAACGTTCGACAACGCCAGCAAAAACAAAGAAAGTAATCGGTCTGGAGTCTAAGAAGAAACTAAAGATCAAAGCGAAGTTATTCGAAAGTGTTGCTAAACCAGTCAACAAGGATAAGGTCTCCGGTGGATTTTTAGAATCGGTGGTCAAAAAAGAGCACAATAAGAAGAAGAAGAAGAAGAAAGACAAAGATAAGGAGAAGGGGAATCACAAGGAAAAACACAAGATACCGAAGACTGATAAAACTGAACCTCCGATTCCCAAAATAAGATTCAAGCTCGACCCATCTGGGGAGTCCAAGGTCGTCGAAACCAAAGCAACAGGTTCATCTAAAATAATAACGTCTCCTGGTCAAACGTCGTCGAAACAATCATCCATTATGATAGAAACAGAAAAAGTTAGCAGAAGCATCATAACCGAAACACTGTCTAATAATACACTCGATTATGACCCTAGTAAGGCGTACTTTTGTCCTGTTTGCAAGAAGCAGGACGATGGTTCCCCTATGGTTGGCTGCGATGGTTGTGACGAGTGGTGTCATTGGGCTTGTGTTGGTTTGATTGCTGCCCCTCCTGAAGACGAACAATGGTACTGTCCTCAGTGTTTACTGAGAAGAGAAAAATCGAAAAAGGGGAAAAGCAAGAAAAAATCCTAA

Transcript

Ppa0G319480

Protein

Uniprot

Gene family

Uniprot term	Description
Q5VWG9	Transcription initiation factor TFIID subunit 3 OS=Homo sapiens OX=9606 GN=TAF3 PE=1 SV=1
Q5HZG4	Transcription initiation factor TFIID subunit 3 OS=Mus musculus OX=10090 GN=Taf3 PE=1 SV=2
Q5EAW9	Transcription initiation factor TFIID subunit 3 OS=Xenopus laevis OX=8355 GN=taf3 PE=2 SV=1

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|PHD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00628	PHD	PHD-finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011011	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR001965	Domain	Zinc finger, PHD-type	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR019787	Domain	Zinc finger, PHD-finger	Interproscan
IPR009072	Homologous_superfamily	Histone-fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46452	TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0002039	Molecular Function	p53 binding	Interproscan
GO:0005669	Cellular Component	transcription factor TFIID complex	Interproscan
GO:0008134	Molecular Function	transcription factor binding	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0046982	Molecular Function	protein heterodimerization activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14650	TAF3; transcription initiation factor TFIID subunit 3	-	Transcription machinery	ko03021	deepkoala