Gene detail

Detailed information of Ppa0G326180 in Paragorgia papillata

Genomic Location: Contig00473:294126...300161
NR annotation: XP_028411000.1, pre-B-cell leukemia transcription factor 1-like [Dendronephthya gigantea]
Species abbreviation PPAPI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8QGC4	Pre-B-cell leukemia transcription factor 1 OS=Xenopus laevis OX=8355 GN=pbx1 PE=1 SV=1
B4F6V6	Pre-B-cell leukemia transcription factor 1 OS=Xenopus tropicalis OX=8364 GN=pbx1 PE=2 SV=1
Q7PMT1	Homeobox protein extradenticle OS=Anopheles gambiae OX=7165 GN=exd PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005559 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05920 all species →	Homeobox_KN	Homeobox KN domain	Family	Interproscan
PF03792 all species →	PBC	PBC domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356 all species →	Domain	Homeobox domain	Interproscan
IPR005542 all species →	Domain	PBX, PBC domain	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR017970 all species →	Conserved_site	Homeobox, conserved site	Interproscan
IPR008422 all species →	Domain	Homeobox KN domain	Interproscan
IPR050224 all species →	Family	Three Amino acid Loop Extension (TALE) homeobox	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11850 all species →	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0009887 all species →	Biological Process	animal organ morphogenesis	Interproscan
GO:0048568 all species →	Biological Process	embryonic organ development	Interproscan
GO:0048666 all species →	Biological Process	neuron development	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Ppa0G326180.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.