Gene detail

Detailed information of Ppa0G329110 in Paragorgia papillata

Genomic Location: Contig00479:196392...202159
NR annotation: WP_270861496.1, RNase H-like domain-containing protein [Campylobacter sp. CN_NE4]

Gene Structure

More details in Jbrowse

Sequence

CDS

Ppa0G329110

ATGAGAAAAATAGAGTTGCAGGGAAAATTGGGATCTGTTCATACTGGAACCAAACTAGATTCGAGTTTTGATGTTACTAAGCACATTAGAATGGTTCCACCTTTCCAGGAACGGGATGTCGATAAGTATTTTTTACATTTTGAAAAAATAGCCGAAAATCTTAAGTGGCCCAAAGAAAATTGGACCATGTTATTGCAAAGTGTTTTAGTTGGAAAAGCTCGTGATATTTACGCACAGCTTTCGTTAGATATAGCTTCGGAATACGATACCGTTAAGGAATTGATTCTTAAGGGGTACGAGTTGGTCCCTGAGGCATATCGTCAGAAATTTCGAAATTTTGAAAAAACGGGTAGGCAAACCTATTTAGAATTCGCTAGAGAAAAAGAGCAACTGTTTGATCGCTGGTGTGCCTCCCAAAAATCCGATAAGGAATATGACCAATTGAGACAATTAATTTTGATTGAAGAGTTTAAAAGATGCATTCAAAGTGATATATGCGTATTTCTAAATGAACAAAAGGCGACAACCTTAACAGCTGCCGCGCGTTTGGCCGACGATTTCATTTTAACACATAAGGTTTCATTCACAAATAAGGCGCCACAGTCTTGGTCTTTTCGAGGCAATAATTCTTCATCATTTGATAGCAAGCGTGTGTTTGGTGCTAAGAACCTGTCAAAGGAATATTCAGACAATTTTAATCCTGACGCTAAAAAGTCCAAACCACCCACTGCTAGATTTGAACCACCTTCTCAAGGCAAGCCTTCAAACTCTCCTTTTAACAACATAGTTTGTAGTTATTGCAGAAAGAATGGTCATGTAATATCAGATTGCTACAAATTGAAACGGAGACAACAAGAGCAAGGTGAAGTAAAACCCAATGGCTGTACTTCAAAACAGTCCATGCGTGACAATGTGCAAGACACATCTGTCATTAAGCCACTTCCTTCTCTTAACTGTGAGGTTAAGTCCTCTTTTGACCCTATTATGGAAGTCTTTCAACCATTTATTCATAATGGTTTCATATCACTTACAAGTGATTTGTCAAAAACAGTTCCTATTAAAATTTTAAGAGATACTGGGGCTTCCCAATCTCTTTTGTTGGCAGATACTTTACCATTTTCTCAGGAGTCTTACTCTGGTAAGAATGTTTTGATCAGAGGAGTTAATTCTGATACGTTCAGTTCTCAACAATTACACAAAGTCAATTTGTCGTCAGACTTAGTGTCTGGTACCGTTCTATTGGGTATTAAAACGACTTTACCATTCGAGGGAATTCATCTACTTCTCGGCAATGACCTTGCAGGCGAGAAGGTAGTCGTTAACCCAATTTTGACTGATAAACCGTGTGTAAATCAAACTTCTGATCCTATTGACCGAGAAATTTCAGATTTATATCCCGCATGTGCGGTAACTCGAGCCATGCGTAAGCAGAAGCAATTAGAACATGACTCTAGTGAAGACGTCATCGATATGTCAGACACCTTTCTTGGCCAAGCTTTCGAAGGCGTTAATTCAACATCTGAATCGTCTCAAGCAACCTTTTCAAAGCCAAATCTTATTAATGCACAACAAAATGATCCTGATATCTCTGTCTTATTTCATAAAGCAGTTGACGAGGCCGAAATTGCGAAGAATCCGGTCTGCTACTTTATTAAAAACGATATTTTAATGAGAAAGTGGAGACCGCCTGATGTTTCGGCAGACGATGAGTGGTGTGTCAGATATCAGATCGTTGTGCCAAAGACCTACCGGTCTGACATACTTAGCCTAGCGCATGAAACCCCCCTTTCTGGCCATTTAGGTGTTACCAAAACCTATCTTAAAATTCTGAGTCATTTCTACTGGCCTAATCTTAGACGAGATGTAGTGCAATTTTGTAAAACTTGCCACACTTGTCAGGTTGTTGGGAAACCAAATCAGGTGAATCCAAAAGCCCATTTACAGCCAATTCCAGCCTTCGAGGAGCCGTTTAGTAGAGTAATTGTAGATTGTGTTGGCCCATTACCTAAGACTAAGGCAGGCAATCAATATCTGTTGACCATTATGTGCGCTTCTACAAGGTTCCCTGAAGCTATACCTTTGAGAAATATTAAGGCAAAAACCATTGTTAAGGCCTTAATTAAATTCTTCACTTTAGTTGGCCTTCCTAAGTCTATTCAATCGGACCAAGGTTCAAATTTCATGTCTGGAATTTTTCAACAGGTGATGCACGAGTTAGGCATCAAGCAGTATAAATCTACTGCCTATCATCCTGAAAGTCAGGGTGCTCTCGAAAGGTTTCACCAAACTTTAAAAAACATGATGAGAACCTATTGCCTCGACACACAAAAAGACTGGGATGACGGCATCCATTTACTTTTATTCGCTGCTCGAGAGTCAGTTCAAGAATCTCTGGGCTTTAGCCCATTTGAGTTAGTTTTCGGACATACGGTTAGAGGACCACTTAAACTCCTAAAAGAAAAATTCCTTTCGGAAGATGGCGGTTCGTTAAATCTTTTGCAGTACGTTTCGGACTTTCGCACAAAACTTACGAAAGCATATAGGCGTAAACAAAAACAGTTGTGCCATGTAAATATGCTAAAGCCGTATTACGATAATGATAGGGTAATACATTCTGTAAATGTAGTGAGTTCTGAGTCTGATAAAGACAAAGACGATGTAGACCTAGGAGAACTTTCTAGTCTGTCTGCCACATCAAAACTCAACAACTCTGATGTCCTACATAATCTGGATTCCAAGCTATCTCATCTTCCACCGAATCAACGTCAAGATCTGCAGAACCTGGTTAAAGAATTCGAACACCTTTTTCCAGATATTCCTACCAGAACAGACAAAATTTTCCACGATGTCGACGTTGGTGATGCTAAACCAGTGAAACAACATCCCTACCGGTTAAACCCAGTGAAGCAGAAATACCTACGTGAGGAGGTTCAATATCTTTTGGAAAACGACTTCATAGAACCAAGTCAAAATCAATGTGAACTGGCGTTTGGAAACCTTAGAGCCATGTTGAAAAGTGCTCCCGTTCTGTCAGCTCCAGATTTCAACCATCCATTTAAGTTAGCTGTGGATGCAAGTGATGTAGCTGCTGGTGCTGTTTTGCTCCAAGAAGATGAAGACGGGATTGACCATTCGGTGTGCTATTTTTCCAGAAAGTTCAACAAACACCAGAGAAACTATTCGACAATCGAAAAGGAGTGTTTAGCTCTGGTTTTCGCTTTACAGCAGTTTGAAGTTTATGTCTCTTCCTCAAGTCTGCCGATCGTTGTATTCAGTGATCATAATCCTTTGGTATTCCTCCACAAGCTGAAGAACAAGAATCAACGCCTATTGCGATGGAGTCTAGTTTTACAAGAATATAATTTGGAAATCAGACATATTAAAGGAAAAGACAATTTGATTGCGGACTTGAATCTCGTCTTTGCATTTTGGTTGCTCTTCGATGACAGTTTTGATTTTTGA

Transcript

Ppa0G329110

Protein

Uniprot

Uniprot term	Description
P10394	Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster OX=7227 GN=POL PE=4 SV=1
P04323	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1
Q09575	Uncharacterized protein K02A2.6 OS=Caenorhabditis elegans OX=6239 GN=K02A2.6 PE=4 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00665	rve	Integrase core domain	Domain	Interproscan
PF02023	SCAN	SCAN domain	Domain	Interproscan
PF17917	RT_RNaseH	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF17921	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR001995	Domain	Peptidase A2A, retrovirus, catalytic	Interproscan
IPR038269	Homologous_superfamily	SCAN domain superfamily	Interproscan
IPR003309	Domain	SCAN domain	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR041373	Domain	Reverse transcriptase, RNase H-like domain	Interproscan
IPR041588	Domain	Integrase zinc-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46888	ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0004190	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan