Gene detail

Detailed information of Ppa0G334020 in Paragorgia papillata

Genomic Location: Contig00485:874891...893798
NR annotation: XP_028398136.1, vesicle-fusing ATPase 1-like [Dendronephthya gigantea]
Species abbreviation PPAPI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G334020

ATGGCGAAGAATTTAAAAGCCGTAAAATCACCTTCGGACCAGCTTTCACTTTCCAACTGTTTTATAGTGAATGAAAAGGATTTTCCAGACGAAAAAGTGAAACATGTTAAATTACGTGGTACTGGCTATCAAGATTGTATATACTCGATATTAAAAACTATAGAAGTTAAACTAGGAACAGTGGGTGTCAGTTTGGTTCAGAGAAAATGGACAAATATAGCCTTAAATCAGGTGATCGAAGTCCAACCATACCACTTTCCACCCAATTCAAATCTTAACAGTATTACAATCGAAACTGACTTCCTTCAGAAATCTCGGGTTAGTCAAGAACCTTATGACACAGACAAGATGGCTGAAGCATTTATTGACCAATTTTGTAACAGAGCATTTTCAGAAGCACAACCACTTGTTTTCACATATGCTGATAAGAAATATCTTCAACTCATTATACGACAAATGGATGTTCTGGATCCCAAGAAAACTCTTTCATCAGATACAGAATTTGGAACAATAATTGTAAAACAGGGTGTAATTTCTGGAAATACTAAAATCATATTTGAAAAAGCTGAGGGTTCAGCTCTAAACCTTGTTGGCAAATCTAAAGGAAAATCTGCAACACATTCAATTATAAGCAGTGACTGGGATTTCACAAAATTGGGAATTGGAGGATTGGATCAGGAGTTTTCAACTATCATTCGAAGAGCTTTCGCTTCAAGACTTTTTCCAGCAGAACTTGCGGCTGAAATGGGAGTGAAACATGTTAAAGGCATTTTATTGTATGGACCTCCAGGAACTGGGAAGACCTTAATGGCAAGACAAATTGGCAAGATGTTGAACTGTCGTGAAGCTAAAATCATTAGTGGACCCGAGGTGCTTAACAAATATGTTGGAGAGTCTGAAGCTAATATAAGAAAACTCTTCGCAGAAGCTGAGGAAGAACAAAAGAAGCATGGAAACAATAGCGGTCTTCACCTTATCATTTTTGATGAATTTGATGCCGTTTGTAAATCAAGATACAGTTATGGGTCGGGTGGAACAGGAGTACAAGATTCCGTCGTCAATCAATTGTTAGCTAAAATTGACGGAGTAGAACAGCTCAACAATGTTTTGCTTATTGGAATGACCAATAGGAAAGATCTTATTGATGAAGCATTGCTCAGACCTGGAAGAATGGAGGTTCAAGTTGAAATTAGTTTGGCTGATGAACCTGGCCGTCTTCAAATTCTTGAAATCCACACCAAGGCTTTGCGAGAAAACAATTTTCTTGGTGAAGACGTTGATTTAAACGAATTAGCGGCACAGACCAAGAATTTCAGTGGAGCCGAGATTGAAGGACTGGTACGAGCTGCTCAATCAAATGCAATGAATAGATTTCTTAAGATGGGCACAACGTTAGAAATAGATCCGGAGGCTGCCACGAAAGTTATTGTCAGACAACTTGATTTTAATCACGCTTTGGAAGTTGACATCAAACCGGCGTTTGGTGCAAGCGACGATGACTTGGAATTTTATGTCGCTAATGAAATAATTCGCTGGTGTCCAATGATACAACAGATTATTTCCGATGGAAAACTGCTGATTGAGAAGACGAAGTTACACGATAGTTCAATGGGTCCAGTCAGCGTTTTACTGGAAGGTCCAGTTGGCGCTGGAAAGACAGCTCTGGCAGTTAAAATGGCGTTGTCATCCGAATTTCCTTTAATAAAAATGTGCAGTCCAGAGAACATGATTGGCTTTTCAGAAATGGCAAAGTGCAACGCAATTAAAAAAATATTCGATGACGCTGATAAGTCGGAGCTGAGTTGTATAATAATTGACGATATTGAGCGACTGTTAGAATACGTTCAGATTGGACCGCGGTTTTCCAATATGGTTTTTCAATCATTGTTGGTTCTTTTAAAGAAGAAATTGCGCAAGGGAAAGAAGTTACTTATTGTGGGTACCACGAGCTGCAAGAACGTCCTTCAAGACATGGGAATGATTCATGTATTCAACTTGGTTCTTCACGTACCAGATTTGTCCTCAGTAGATCATCTCGTAACTGTCCTTGAGGCGCGAAATCTTTTTGACGACGAGGAATTAAAGAAAATTCGTAGCGAAGTCAAGGAACGAAAATTGTGGATTAGCGTGAAGAAATTACTAATTCTGGCTGAGGTAGCCACTAGGATGCAGCCCTCGTCAAGAGTGAACAAATTTATTTCTCTTCTGGAGACCGAAGAATGCCTGAGAAGCGGCCCTATTTAA

Transcript

Ppa0G334020

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P46460	Vesicle-fusing ATPase OS=Mus musculus OX=10090 GN=Nsf PE=1 SV=2
P18708	Vesicle-fusing ATPase OS=Cricetulus griseus OX=10029 GN=NSF PE=1 SV=1
Q9QUL6	Vesicle-fusing ATPase OS=Rattus norvegicus OX=10116 GN=Nsf PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003169 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00004 all species →	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan
PF17862 all species →	AAA_lid_3	AAA+ lid domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR029067 all species →	Homologous_superfamily	CDC48 domain 2-like superfamily	Interproscan
IPR003338 all species →	Domain	CDC48, N-terminal subdomain	Interproscan
IPR003960 all species →	Conserved_site	ATPase, AAA-type, conserved site	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR003959 all species →	Domain	ATPase, AAA-type, core	Interproscan
IPR039812 all species →	Family	Vesicle-fusing ATPase	Interproscan
IPR009010 all species →	Homologous_superfamily	Aspartate decarboxylase-like domain superfamily	Interproscan
IPR041569 all species →	Domain	AAA ATPase, AAA+ lid domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23078 all species →	VESICULAR-FUSION PROTEIN NSF	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0005795 all species →	Cellular Component	Golgi stack	Interproscan
GO:0006891 all species →	Biological Process	intra-Golgi vesicle-mediated transport	Interproscan
GO:0035494 all species →	Biological Process	SNARE complex disassembly	Interproscan
GO:0043001 all species →	Biological Process	Golgi to plasma membrane protein transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06027	NSF, SEC18; vesicle-fusing ATPase	EC:3.6.4.6	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.