Detailed information of Ppa0G335700 in Paragorgia papillata

Genomic Location: Contig00493:83572...97394
NR annotation: XP_028408036.1, lysine-specific demethylase 7B-like isoform X2 [Dendronephthya gigantea]
Species abbreviation PPAPI · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P0CF52Lysine-specific demethylase 7B OS=Danio rerio OX=7955 GN=jhdm1db PE=2 SV=1
Q5RHD1Lysine-specific demethylase 7A OS=Danio rerio OX=7955 GN=kdm7a PE=2 SV=2
Q08D35Lysine-specific demethylase 7A OS=Xenopus tropicalis OX=8364 GN=kdm7a PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001471 (this species only)
Ubiquitin familyE3|E3 activity RING|PHD · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF17811
all species →		JHDJumonji helical domainDomainInterproscan
PF00628
all species →		PHDPHD-fingerDomainInterproscan
PF02373
all species →		JmjCJmjC domain, hydroxylaseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR003347
all species →		DomainJmjC domainInterproscan
IPR041070
all species →		DomainJumonji, helical domainInterproscan
IPR001965
all species →		DomainZinc finger, PHD-typeInterproscan
IPR011011
all species →		Homologous_superfamilyZinc finger, FYVE/PHD-typeInterproscan
IPR019787
all species →		DomainZinc finger, PHD-fingerInterproscan
IPR019786
all species →		Conserved_siteZinc finger, PHD-type, conserved siteInterproscan
IPR050690
all species →		FamilyJHDM1 Histone DemethylaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23123
all species →		PHD/F-BOX CONTAINING PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003712
all species →		Molecular Functiontranscription coregulator activityInterproscan
GO:0006357
all species →		Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0006482
all species →		Biological Processprotein demethylationInterproscan
GO:0032452
all species →		Molecular Functionhistone demethylase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for Ppa0G335700.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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