Gene detail

Detailed information of Ppa0G337790 in Paragorgia papillata

Genomic Location: Contig00497:1618733...1637676
NR annotation: CAB4006288.1, Hypothetical predicted protein [Paramuricea clavata]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G337790

ATGGTTCGTGTTCTTATGTGCCATAATTTTAAAGAACAGAAAGTCTTTTCAGATGCATACGAACCAACGTCGATAACTTGTTCTGTTTTACGGGATTTGGTCTTTGTTGCAACCAGTGACGGTCCTGTCTTTGTCTACTCCTTGCTCGAAGATGGCTTCCCTTTGGTTTGTCAGTTCCCTTTGCTTTCTCCCTCCAAAGAACTCATTTTCAGCGACGTTGGTAACTATTTATTAACAAGGGAAACAGCCAGAAAGGATAAACTAGGGCACTGTACAGCTAGAGTTTATTTTAACTGGGCCAATTGGAGCGTAAACAAAAGCAAACCGAACCAAAAGATCAAGCTTCTTCAAGTTGGGTTCTCTTTCTCACAAAGCTACTGTTTGGAGCCAGGGGCTCTTACTGCCGTAGAAATCTTATCCAGGTTTTCAGTGCGTGGTTTATCATGTTGTCCTTCAAGTGGGAACATTGCTGTGGCTACAGAAACTACAGCCACTGTTTATAGACGATGTACTGAATGCCCTTTTGACTTTCAAAAGGTGTACATTGTGGAACCTGGGTTTTCGATTCGAAAGCTTGCTATTTGTGAACAGTTTGTGGCGTTTACGTCAACCAGTGAGGTTCGTGTACTAAGGGTGACATTTGGTGGAGAAACTGCTTTATCAACTGAGCAGAGTTTGCTGAAGAACGAGTTCAATTCAGAAACTGAACAGTTTCTTTCCAAGGGTGTCCTCTCAAACAGCATCACTCAGAGAGAAGTATTTGATGAACAATTTGTAGTCTGGTCATTTGATCAATGTTCAGATACATCATCCGAACAATCATCATTTTGGGATAATATTTTAGCAAGCAAGGAATGGAATGATAATGATCTTGAAGTCGAAGATCACCACACAACACCATCCCTGGTTGAACTTCCCTCGATCAACGAGGAGGTCCCATTCATTGATTATTCTGAGGAATCTTGCGAGGTCTTAGGTCCAGTCAAAGTTGTCCATGGTCATCCTTTAAAAGTACAAGGAGCAGATGTTCAAGATGTTACAATGTTGTATCGTTGTTTTGAAGCAGATCCCATGAAAGTCGCTGAGCTACCTGAACTTCATTCTTTACAGTTGGTGCCCTTTTATACCAATGATTGCATTGCTGATGATGAATTATCATCCGCGACGGACTCCACTGTTCCTAAACTTTCTGGAATGATGTGTTTTGTATCAACCCTGAAAAAAGGATTCATGTACAATGTATTTTCAAAAACAGAATTCCTCTCTCATTGTACATATACCTGTGACACAAAAATGGCAGCCATTCAGGGAACTTCACTCTACGCTGTCACTGGTCAAGCGGTAGAAACATACACCATTCCATTATACGCTGCTGTGGCTAAAAATACCAGAGCAAATAGGTCATCTGATTTCAGTGACAAATTAGAGGTAGTCATTCCAACAGTGAATAATGACATTGAAATGAATTTAGAAGCCAGCCTTGATGATGGCAGTAGAACATTGACTGGTGAAGATGGTGGTGTGTGCGATACTGTGGTTGATGGTGTGGTGCCAGAGGACATGACAGTTGAGCAGAGAAGTGAAGTGTCGGAGATTGAAGATACGCATCAAAAGCTGTATCCTAACTTTGGTTTTCCAGTTTATGACATAGACATATTACAAAAGCCATGTCCTTCTCCATCCAGTGATCTTTGTATGATGATTGGTGTTCATCAGTTTGTTGGTTTGTATTCTATCCTGGCTGCTGGGAACAGAATATTGCTGTTGTCTGATACGACAGCTAGCCCATCTAAGCGACACAGGAAAAATAGAAAGTTGAGCACCGAAAACAAGACCAAGGATTGGACATTACATGTTCTTAAAGCAATGGACATGGAGGAACTGTATCGCAAAATAGAAAGTTTGACTGAGAAATCTGCGAATTTAAATGCAGATTTGCGACTGCTAGAAGAACAGCACTTAATTCTAAGATCTCAGTTTCAAGTTGGTTGCATGTCTGAAAGAAAACGCAATTCATTGCTAGTGATGTTAAAGAATTCTGTGAGAAGCTTGGGAGACTATCACGCAAGGTATGCTGTAGAACAAGTGCAAGAAGTTATACTGTACTACACAATGGCAAACCTCTCTATTGAAGATGTTGTTGACCAGCATATTGAAGGATGCATTGAAACGGACAAGATAAAGGACAGAAAGTTTGGCAAAGGTTTGGTATGTTATTTAAATGATATTCTCTTCCAGAAAAATCAAGAAAGGAGCTGTATTCATTTGCCTCAGGTGACTGCAGATAAAGTGTTGTACATCTACAGCAATGCAGCTCCTAGTCTCTTGTCTATTCTCATTCTCCGACCTCTGATTGATGGCTATACGCCTGAACTGGCTGTGAAACTACTTACTAAGTTGAAGAAAACTAAATCATATAGGTTTACGACAGAAGACCATTTGGCACTAGCAATTGAGTATCTAAAAGTCTGTGAGCTGGAACACGCAAGTGGAGAGTTGTTGAATTTACCCAAGGACAAATTAGCTGAGATTTGTGTGAAACATCATTATATATTGTATGAGAAAGATGAAACCATGAGCCCGCTAGGGCAGCTGCTCAGACGACGTCTTCCAAAAGTGTTCATCAAGACGCTGGTCTCTCTTCGTTTTAGGGGCATTATGCCTTTGTCAAACACCATTAATTTTCTTCAGGGCAAAGAATGTGAAATACATCAAAACACTCATTTATTAGAATATCTGGAGCTGGTACTAAATGATCAAAAAGGAAAGACGTCTTTCAAAGAAGCAAAGAAACTTCTGATCAAGATCTATTTGGAAAAACTTTCTCAGAAGACTACAGTTCAAGATGGCGACGTTCTGAGATCATCTTATCGTTTGCTTAGAGGTTCTGGTCATTTTTCTAAACGTTTTTCATGGCTGGACAAATTGCCACCATTTAATGGTTGTGTGTTGGAACCACAGGAATGTCTGTTGGTTAAGGCAAATATTTCGGCCGGTGTACCACGGGGAAGCCGTTGGTTTCCAAGTCGCGCCCCGCAGTTAGCTGTGAGTGACACTAAGACGAGAACCTCTTGTACTTGCTGTTGTTGTTGGGAAACACTTCTTAAACTGCAGTCGCTTTTGTGTTCAAAATACTGTGATACGGAATTGGGAAACTTTGTGTTAAGCAGTTTGATTGGTAGATCGTTATCTGGTGATATATCCATTACCCTCTTATGCTTGCCTCTTATTGACGAACATGAAAAGGCTATTGAGTCACTGTTGTTAATAGAACCATCTGTTGTGTTAACGTACGCAAAGCAGTTTTTTGGTGGTTGTCATATCAAGTGGCAATGTGTGTTAAATGTCTTAACACAAAGAATTCGAGATGGAAAAGAATCGGAAACAATCCAGAAGACATATAAAGAAATCCTGCGAGAAACCTTGGTTATTCTCTCGAAGTACACAACGCCTACAGTATTCTTGTCTCTGCTACCAGACGATGGAAACTTTGCGTTTTTCCTTCCATTTCTTGTCGAGTCTTGCCAGAAGAACGCCGCTAAAAATTTATCAAATCAAATCACTGCGAAGTCCTAA

Transcript

Ppa0G337790

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003955 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14763 all species →	HPS3_C	Hermansky-Pudlak syndrome 3 protein, C-terminal region	Repeat	Interproscan
PF14761 all species →	HPS3_N	Hermansky-Pudlak syndrome 3 protein, N-terminal	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029438 all species →	Domain	BLOC-2 complex member HPS3, C-terminal domain	Interproscan
IPR029437 all species →	Domain	BLOC-2 complex member HPS3, N-terminal domain	Interproscan
IPR017216 all species →	Family	Hermansky-Pudlak syndrome 3 protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR28633 all species →	HERMANSKY-PUDLAK SYNDROME 3 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006996 all species →	Biological Process	organelle organization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20190	HPS3; Hermansky-Pudlak syndrome 3 protein	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.