Detailed information of Ppa0G340380 in Paragorgia papillata

Genomic Location: Contig00499:130819...134873
NR annotation: CAB3993239.1, collagen alpha-1(I) chain-like [Paramuricea clavata]
Species Paragorgia papillata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
No Swiss-Prot hit above the reporting threshold for this gene.
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0021425 (this species only)
Ubiquitin familyDUB|USP|USP · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00443
all species →		UCHUbiquitin carboxyl-terminal hydrolaseFamilyInterproscan
PF00023
all species →		AnkAnkyrin repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR028889
all species →		DomainUbiquitin specific protease domainInterproscan
IPR002110
all species →		RepeatAnkyrin repeatInterproscan
IPR001394
all species →		DomainPeptidase C19, ubiquitin carboxyl-terminal hydrolaseInterproscan
IPR034998
all species →		FamilyAnkyrin repeat and LEM domain-containing protein 1Interproscan
IPR001841
all species →		DomainZinc finger, RING-typeInterproscan
IPR036770
all species →		Homologous_superfamilyAnkyrin repeat-containing domain superfamilyInterproscan
IPR013083
all species →		Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR038765
all species →		Homologous_superfamilyPapain-like cysteine peptidase superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46427
all species →		ANKYRIN REPEAT AND LEM DOMAIN-CONTAINING PROTEIN 1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0004843
all species →		Molecular Functioncysteine-type deubiquitinase activityInterproscan
GO:0016579
all species →		Biological Processprotein deubiquitinationInterproscan
GO:0000712
all species →		Biological Processresolution of meiotic recombination intermediatesInterproscan
GO:0000724
all species →		Biological Processdouble-strand break repair via homologous recombinationInterproscan
GO:0004519
all species →		Molecular Functionendonuclease activityInterproscan
GO:0004520
all species →		Molecular FunctionDNA endonuclease activityInterproscan
GO:0005654
all species →		Cellular ComponentnucleoplasmInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for Ppa0G340380.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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