Gene detail

Detailed information of Ppa0G342560 in Paragorgia papillata

Genomic Location: Contig00505:103703...116765
NR annotation: XP_028407464.1, kinesin-like protein KIF20A [Dendronephthya gigantea]
Species abbreviation PPAPI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G342560

ATGGCCGACGTTAGCGTCTTCGAGGACATTTTTAATGAATACAACGGGAAGCCAGAACCGGTGGAGGAAACGTTTGATGAAATTAAAAAGAATCTCTTGCGTGATTTCGAGACAGCTACAACGGTTATAAATACTGGCAAAGTTTGTGGAGAGAGAGAACCGGTAAAGGTTTATTTAAGAGTAAGACCGTTTACGAATAAAGAAATTACAGCTGGAGAGTCTCAAGGGTGTTTAGAAATAGTGAATTCATCGTCTGTTTTGATGCATCCGCCAAAGACTTCGTTTACATTCAAACATCAATCGCGAAACACAATCAGTGCAGAAACTGTGCATCGTTTTAGCTTTTCTCGTGTGTTTGGACCCGATACAAGTCAGAAATCCTTCTTTGAGGATACGTCTTTTAATGTTGTGAAAGATTTTATTGATGGACAGAACTGTTTAGTGTTCAGTTATGGCGTAACAAACGCAGGAAAAACATACACGATTCTTGGCAATGGTAAAAATGTGGGAGTACTTCCAAGAACGATAAATATTCTTTTCAACAGTTTTAAAGAGCAAAACTATGTGCGTTCAAATCTCAAACCAAGAATGTTTTGTGATGTTGTGAAACTGAGCAGTATACAAGAAGAGCGAGAAGAGAGCAAGAAAAAGATGTTACTGTCGTTAATTGATGTGCCAACATATCATAACAGTGTCAGCAGTACTGATTTGTCACTTCAGGATATGTCACAAGAACAATCCAGTATTAAAGATTTCTCCTCAATTTTGGATGCCACTAGTGTTGATGTGGATTTCCAGGGACCAATTCAATTTTCTGTTTGGATCTCCTTTGCCGAGATTTACAATGAAAACATTTATGATCTGCTGGAGCCAATTTCCCTTGGAAAAAATAAGAAAAGAACAGTGTTAAAAGTTGGAGATGACAGGAAAGGCAACCCCTATATTAAAGGTATGACAGAAATTCATGTAAATAATGCTGAAGAAGCACTACAGCTCTTGAAAATTGGGAGGAAAAACCAAAAGATAGCATCAACAAAATTGAATGAAAATTCCAGTAGAAGCCATTGTATTTTTACGCTTAAAATTTTGAGAGTGGTCAACACAAACGAACCCCATGTTGCAAGAGTTAGCAGGTTGTCCTTCGTTGATCTGGCTGGGTCTGAGAGGTATACTAAGACACAAAACACTGGTGAACGTTTGAAGGAAGCTGGAAATATCAACACCTCCATCATGACTTTGGGAAAATGTGTTGCGTTATTAAGATACAATCAAAACCACATAAACAATCCAAAGAACATTCCATTTCGGGAAAGCAAGCTTACTCGGTTGTTTCAAGGATTCTTTTGTGGCAAAGGCAAAGCATCGATGATTGTAAATGTAAATCAATGTGCATCTGCTTTTGATGAAACATTACATGCCTTGAAGTTCTCAGCAATTGCCAAGAAGGTAACAACCATGGTTCAAGCACCACAAGTTGAAACTCGTGACCCCCATGTTCTTCCAAGATCTACTCGCTCATCTGTAGCTTGGGTTGATGGTTCATTATCAACTCCAGCTGGTAATAAAGCACAGACTGAACTGAACGAGACACAGCTGGCTCCTTTAGCAGAGGAGGAGAAAACTGACATTAAAGAACATACATACCAGGAACTTGAAGCAGTTATTGATGTTCTTCAAGCTCAACTTATTGAAGAGAAGAAGAATATGGTGTTGATTGAAGTAAAAATAAGAGAAGAAGTTTGCCAGGAAATGTCAGAGCAAATGGTTGAAATAGAGAATGATTACAATGAGCGATTTCTTGAAAGCCAACGTATGAATGAAGATTTGTATGAGCAAAGAATGGATCTTTTAACCAAGTCTGTTAAGAAGAGTAGAAAGCGTCCTCGAGTTGACTGCGCCGTTCAAGATGGTGACGATGAGTGGGTCTCGAGTCTTCTCTTGCATCAGGAGAAAATGAAAGTTCAGAACAGCAGGATATATTTTTATTATTTGTCTGTTTATCTGGAACAAAAAATGAAGGAAATGGAAGATCGTGAATCGAAAGAAAGTGAAAGATTTAAGAAAGAACTTCGTGAACGTGATGAAAAAATTGAATGTCTGCAAAGGATTGTTAAAGATTGCAAAGTTGAACTGGAAGCCAAAACGACTCAATTGATGTCAGTGAAAAAGGTTCAAGGAGGTAGATGTGCAACTCCAACAAAAACTACAGGAAACAGTAATCTTTTGAAGCAACTGGAGAAACGTCTAGAAGAAACAACAAGTGCGTTGGATAGGAAGAATTCCCAGGTTATTGACAAGAATAATATCATTGCTAGATTGGAGAACTCTTTGAAAGATGCCAGAGAAGATCTACAAGAACGAGAAAAAGAGTTGAGCGAGTTAAGAGTGAAGCATGAACTGTTAACCAATGAAAACAAGGATGGCATTGACAATGAAAGAGAAATTAAACAATTGAATGTTCAGTTGAAGGAGAAGGAATCTGCGTTGATTGCCAAAACTAAAGAAAACGATGAGGTGTTGGAAAATCTGAAGTTTGTTGAAGGAGAGGTGGAAATTCTTACCAGCAAAGACAAAGAAAATCAAGATGAAATAGTGAAACTGAGACAACGCGAAGATGAATTAAAAAAGCAAGTGGATGAATATGAACAATTAAAGTTAAATCTTGAGAAACAACTGGAAGAGAACGAAAATGTTTTAAAAGATACAAAAACTGAAGCAGAGGAGTTAAAGAATTCAAGTGAGCTAAAAGAACAGGAACTTCTTCGACGTGAAGTCAAAATTAAAGAATTGACTGAAATTACTGACGGACTAAAAGCAGATTTCGATAAGGCCTTGGTAGATCTAGCCAACGTACAAGCCACTGTTCAGCTACGCAACCAAAAATTGGAACATTTCGAAAGTCAGGACAAGTCACTGAAAGACGCTTGTCGTGGTAAAGAATGTGAGATCATGCAGCTAAGAAAAGATTTTGATGATGCTCGCAAGGAACAGCAGGATAACGAAAAGGATCTCAGTCAACTGAAGGATGAAATGGAAAAACGAATACGAGAAGAAATTTTAAAAGTCAACGTCAATTGGGAGTCCGCAACGGAACGAATGAAAATTGGTTTGGAGGAACAAGAAGACGTTTTAGCCCAAATGGAGAAAAATCTTGCAATGAAAGAAAACGAGTTAAGTGACCTTCGTCAAGAAACTGAGAATTTAAACAAGATCCTTGAAGAAAAAAATGCATCGGAAGAAGCTTCAAGTAATTGGAAAGATAATTTGGAAGATCAAATTGAGAGACTTAAAATTAAATTACAAAAGGAAGTAAAGAAACAAACAACTAAGAAAGATTCAGCGATGCAAGCATTGAGAGATGGTCTAGAGATTGTTAAAACTAAGAAATTAGAGTATGAAACTAAAATGGAAAGTATTATGAAAGAAAAAGAAGACATGAAGAGAATACATGACGAGTTGAAAATGGAAGTCAAACGTTTGAAGTCAGCTAGCAGTGAATCCAGTGATGAGAATGATGTGGATAATGTTTACAAACCCGTCGAGGTCGAGAGTTTCAATTTGCCAACCAATGACAGAGTTGAGATCGACGTCACTCCGATAACTGGTAGTGGATTGGTAAAAAGCGGGAAAAAGACTGGCAGTGCCAAAGCAAAATCATTGAAAAGAAACAGTAGCGACTTATCTTTGAAAGAAGTTAGTTTTTCCCATCAGAAAACTGGTCGCTGCCGCCAATCTAAAGCAAACATGCTTCCTTCGCCATCGTCAGCTTCTTTATCTGTCTTGATTGAAGATTCGGAAAATACAAACCCTCTTGTGGCAAGAAATTCTCAGAAATCGGCAACTTCCGGAAAACGAAGATTTTTCAATAAATTGGGAATATCAGAAAACGGGAAATCTCAAACTGCGAAGAAACGACGAAGAAAACTTTTGAAAAAAAATGAAATTTCTGCACCGTATACTCAATCACCTTTATCCCAGATGGATAAAATGGAGACACCCTCAAGAGCTCAGGAGCTCATTACCCGCCATCTTCGTTCAAGGGTCGTAAAATCAGCGAGATGA

Transcript

Ppa0G342560

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q29RT6	Kinesin-like protein KIF20A OS=Bos taurus OX=9913 GN=KIF20A PE=2 SV=1
P97329	Kinesin-like protein KIF20A OS=Mus musculus OX=10090 GN=Kif20a PE=1 SV=1
O95235	Kinesin-like protein KIF20A OS=Homo sapiens OX=9606 GN=KIF20A PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002573 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00225 all species →	Kinesin	Kinesin motor domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001752 all species →	Domain	Kinesin motor domain	Interproscan
IPR047149 all species →	Family	Kinesin-like protein KIF11-like	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036961 all species →	Homologous_superfamily	Kinesin motor domain superfamily	Interproscan
IPR019821 all species →	Conserved_site	Kinesin motor domain, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47970 all species →	KINESIN-LIKE PROTEIN KIF11	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003777 all species →	Molecular Function	microtubule motor activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0007018 all species →	Biological Process	microtubule-based movement	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005876 all species →	Cellular Component	spindle microtubule	Interproscan
GO:0008574 all species →	Molecular Function	plus-end-directed microtubule motor activity	Interproscan
GO:0051231 all species →	Biological Process	spindle elongation	Interproscan
GO:0072686 all species →	Cellular Component	mitotic spindle	Interproscan
GO:0090307 all species →	Biological Process	mitotic spindle assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10402	KIF20; kinesin family member 20	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.