Gene detail

Detailed information of Ppa0G343420 in Paragorgia papillata

Genomic Location: Contig00505:890393...904082
NR annotation: CAB4005619.1, ribosomal S6 kinase alpha-1 isoform X2 [Paramuricea clavata]
Species abbreviation PPAPI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G343420

ATGCCTTTAGCACAGCTAGCAGACCCATGGAGGAAAATGAATACAACTCCTATTTCCGAGACGGCCGACGATACTTTGGCTTCTGATGAGTGCAATAACGAGGTGAAAATGCAAGAAGAACCGTCTTCAGAGCTTGATATGTCTGCGGTTCTAGCCAAGTCTAAGATATGTCCAAAGGCTGAACGGTCTCATTTTGAACTTCTAAAGGTTCTTGGCCAAGGCTCATTTGGCAAAGTGTTTCTAGTTCGTAAAATATCTGGCCAAGATGCGGGTACGCTTTACGCAATGAAAGTCTTAAAGAAAGCCACTCTGAAAGTCCGCGACCGTGTGAGAACCAAAATGGAACGCGACATATTAGTTGATGTACAGCATCCATTCATCGTACACCTTCATTATGCATTTCAAACAGAGGGAAAGTTGTATCTTATCTTAGAGTTTCTACGTGGAGGAGATTTATTTACAAGACTGTCAAAAGAGGTGATGTTTACAGAGGAAGATGTTAAATTTTATCTTGCTGAACTTGCCATTGCACTTGACCATCTTCATAAAGTTGGAATTATTTATAGAGATTTGAAGCCAGAAAACATATTATTAGATAGTGACGGACATATTCAACTGACAGATTTTGGGTTATGTAAAGACTCAGTTTATGACAAGAAGACATACTCCTTTTGTGGAACAGTGGAATACATGGCACCTGAAGTTGTTAACAGACGAGGTCATACGCAAGCTGCTGATTGGTGGTCTTATGGTGTTTTAATGTTTGAAATGTTGACTGGTGCTCTGCCATTTCAAGGGAAAGATAGAAAGGACACTATGACTATGATTCTAAAAGCCAAGCTTGGAATGCCTCAGTTCTTGAGCAACGATGCTCAAAGTCTTCTTCGAATGTTGTTTAAAAGAAATCCAACAAACAGATTAGGGGCTGCAGAAAATGGAATTGAGGATATAAAGAAACATTCATTTTTCACAACTATTAACTGGACGAAACTTGTGGAAAAGGAATGCAAACCACCTTTTAAGCCTGCAGTCAGAAGAATGGATGATGCATATTATTTTGATAAAGAATTTACCTCAAAGACACCTAAAGACTCTCCTGCTTTCCCTCCAAGTGCCAATTGTCATCAGCTCTTTCGTGGATTTAGTTTTGTTAGTCCAACATTATTAGAGGAAAGTGAGAAACAGAATGGTGGAACAGAAAGCATGGACACGGATGGTGGATTCAACAGTTTAACGTCACAGTTTCCTCGTGTGTTATCATCTTTCTTTGATGACTATGAAGTCAAGGAGGAAATCGCTGTTGGCTCATATTCAGTTTGTAAAAAATGCATTCACAAAGCTTCAGCAAAAGAATTTGCTGTTAAGATTATTGACAAACTAAAAAAAGATCCCCGTGAAGAAGTTGAAATATTGTTAAGATTTGGTGGAAAGCACAACATTATGGGATTACGAGATGTGTATGAAGACGCCAAAAGCGTGTACATAGTTGCTGAACTGATGCGTGGTGGAGAACTATTGGACAGAATAATAAAACAGAAGAGCTTATCTGAACGAGAAGCAGCAAACATAATGTACACTCTTACAAGTGCCTTGGCTTACTTACACAACGAAGGGGTGGTTCATCGTGATCTTAAACCAAGCAACATCATGTTCGTAGATGACAGTGGTTCAGCTGACGCTCTCAGGATTATTGATTTTGGTTTTGCTAAACAGCTACGAGCTGATAATGGACTCTTGATGACGCCATGTTACACGGCTAATTACGTCGCTCCCGAGGTTCTCAAGAAACAAGGTTATGATGCCGCATGTGATATTTGGAGTTTAGGCGTTTTACTGTACACAATGTTGGCTGGATACACGCCGTTCGCTCACGGTGCAGAGGACAACGCGAATCAAATACTGAAAAGAATTGGAGAAGAAAAGTTAGTTTTGTCAGGAGGAAACTGGGACACTGTGTCTGAAATGGCCAAGAGTTTGGTTCGAAACATGTTACACATAAATCCTCACAAGAGACCCTCAGCACGCCAGGTGCTCTCTCATTCTTGGATTATTAATAGAAATACACTTCCACAGAACAAACTTACACTAATTAGTAGCGTTTCAAAAATCAAGGATGCTTTCAAAGCGACGTTTTCCGCTCTTAATTCAAGTCCCGATGCCAGAAAGTTAAAACCTGTAAACACATCATTCCTGGCTCAAAGGAGAGTTGGAAAGGGAGGTAAGAATCGTCGTCGTGGAAAGAACGAAAATGAATCCGAGAAGAGAGAACTTGTGTTCAAAGAAGATGGCCAAGAATATGCTCAGGTTACAAAGATGTTGGGAAATGGACGACTAGAAGCTTTGTGTTTTGATGGAGTCAAAAGATTGTGTCATATTCGTGGCAAACTTCGGAAGAAAGTTTGGATTAATGCTGGAGACATCATTCTACTTGGCTTGAGGGATTTTCAGGATAACAAAGCTGATGTGATCTTGCGATACAACCCAGATGAAGCCATGAGTTTACGAGCTTATGGAGAGCTACCAGAAGACGTGAAAATTGATGAGACCGTTGACATGAATGAAGATGTTGATTTTCGTGATTACGATGATGAATTCTACATTTAA

Transcript

Ppa0G343420

ATTTCTCTCGAGTGCTTCTCTCCTTAGCTGGATCTTTGCGAGAGGATCTCTAGTAGCGATTTCGGGTCGAACAGAAGGATTAGTTTTCTTTTTTTTGAGTCAAAATGCCTTTAGCACAGCTAGCAGACCCATGGAGGAAAATGAATACAACTCCTATTTCCGAGACGGCCGACGATACTTTGGCTTCTGATGAGTGCAATAACGAGGTGAAAATGCAAGAAGAACCGTCTTCAGAGCTTGATATGTCTGCGGTTCTAGCCAAGTCTAAGATATGTCCAAAGGCTGAACGGTCTCATTTTGAACTTCTAAAGGTTCTTGGCCAAGGCTCATTTGGCAAAGTGTTTCTAGTTCGTAAAATATCTGGCCAAGATGCGGGTACGCTTTACGCAATGAAAGTCTTAAAGAAAGCCACTCTGAAAGTCCGCGACCGTGTGAGAACCAAAATGGAACGCGACATATTAGTTGATGTACAGCATCCATTCATCGTACACCTTCATTATGCATTTCAAACAGAGGGAAAGTTGTATCTTATCTTAGAGTTTCTACGTGGAGGAGATTTATTTACAAGACTGTCAAAAGAGGTGATGTTTACAGAGGAAGATGTTAAATTTTATCTTGCTGAACTTGCCATTGCACTTGACCATCTTCATAAAGTTGGAATTATTTATAGAGATTTGAAGCCAGAAAACATATTATTAGATAGTGACGGACATATTCAACTGACAGATTTTGGGTTATGTAAAGACTCAGTTTATGACAAGAAGACATACTCCTTTTGTGGAACAGTGGAATACATGGCACCTGAAGTTGTTAACAGACGAGGTCATACGCAAGCTGCTGATTGGTGGTCTTATGGTGTTTTAATGTTTGAAATGTTGACTGGTGCTCTGCCATTTCAAGGGAAAGATAGAAAGGACACTATGACTATGATTCTAAAAGCCAAGCTTGGAATGCCTCAGTTCTTGAGCAACGATGCTCAAAGTCTTCTTCGAATGTTGTTTAAAAGAAATCCAACAAACAGATTAGGGGCTGCAGAAAATGGAATTGAGGATATAAAGAAACATTCATTTTTCACAACTATTAACTGGACGAAACTTGTGGAAAAGGAATGCAAACCACCTTTTAAGCCTGCAGTCAGAAGAATGGATGATGCATATTATTTTGATAAAGAATTTACCTCAAAGACACCTAAAGACTCTCCTGCTTTCCCTCCAAGTGCCAATTGTCATCAGCTCTTTCGTGGATTTAGTTTTGTTAGTCCAACATTATTAGAGGAAAGTGAGAAACAGAATGGTGGAACAGAAAGCATGGACACGGATGGTGGATTCAACAGTTTAACGTCACAGTTTCCTCGTGTGTTATCATCTTTCTTTGATGACTATGAAGTCAAGGAGGAAATCGCTGTTGGCTCATATTCAGTTTGTAAAAAATGCATTCACAAAGCTTCAGCAAAAGAATTTGCTGTTAAGATTATTGACAAACTAAAAAAAGATCCCCGTGAAGAAGTTGAAATATTGTTAAGATTTGGTGGAAAGCACAACATTATGGGATTACGAGATGTGTATGAAGACGCCAAAAGCGTGTACATAGTTGCTGAACTGATGCGTGGTGGAGAACTATTGGACAGAATAATAAAACAGAAGAGCTTATCTGAACGAGAAGCAGCAAACATAATGTACACTCTTACAAGTGCCTTGGCTTACTTACACAACGAAGGGGTGGTTCATCGTGATCTTAAACCAAGCAACATCATGTTCGTAGATGACAGTGGTTCAGCTGACGCTCTCAGGATTATTGATTTTGGTTTTGCTAAACAGCTACGAGCTGATAATGGACTCTTGATGACGCCATGTTACACGGCTAATTACGTCGCTCCCGAGGTTCTCAAGAAACAAGGTTATGATGCCGCATGTGATATTTGGAGTTTAGGCGTTTTACTGTACACAATGTTGGCTGGATACACGCCGTTCGCTCACGGTGCAGAGGACAACGCGAATCAAATACTGAAAAGAATTGGAGAAGAAAAGTTAGTTTTGTCAGGAGGAAACTGGGACACTGTGTCTGAAATGGCCAAGAGTTTGGTTCGAAACATGTTACACATAAATCCTCACAAGAGACCCTCAGCACGCCAGGTGCTCTCTCATTCTTGGATTATTAATAGAAATACACTTCCACAGAACAAACTTACACTAATTAGTAGCGTTTCAAAAATCAAGGATGCTTTCAAAGCGACGTTTTCCGCTCTTAATTCAAGTCCCGATGCCAGAAAGTTAAAACCTGTAAACACATCATTCCTGGCTCAAAGGAGAGTTGGAAAGGGAGGTAAGAATCGTCGTCGTGGAAAGAACGAAAATGAATCCGAGAAGAGAGAACTTGTGTTCAAAGAAGATGGCCAAGAATATGCTCAGGTTACAAAGATGTTGGGAAATGGACGACTAGAAGCTTTGTGTTTTGATGGAGTCAAAAGATTGTGTCATATTCGTGGCAAACTTCGGAAGAAAGTTTGGATTAATGCTGGAGACATCATTCTACTTGGCTTGAGGGATTTTCAGGATAACAAAGCTGATGTGATCTTGCGATACAACCCAGATGAAGCCATGAGTTTACGAGCTTATGGAGAGCTACCAGAAGACGTGAAAATTGATGAGACCGTTGACATGAATGAAGATGTTGATTTTCGTGATTACGATGATGAATTCTACATTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P18654	Ribosomal protein S6 kinase alpha-3 OS=Mus musculus OX=10090 GN=Rps6ka3 PE=1 SV=2
P51812	Ribosomal protein S6 kinase alpha-3 OS=Homo sapiens OX=9606 GN=RPS6KA3 PE=1 SV=1
Q63531	Ribosomal protein S6 kinase alpha-1 OS=Rattus norvegicus OX=10116 GN=Rps6ka1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001524 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01176 all species →	eIF-1a	Translation initiation factor 1A / IF-1	Domain	Interproscan
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan
PF00433 all species →	Pkinase_C	Protein kinase C terminal domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001253 all species →	Family	Translation initiation factor 1A (eIF-1A)	Interproscan
IPR006196 all species →	Domain	RNA-binding domain, S1, IF1 type	Interproscan
IPR016239 all species →	Family	Ribosomal protein S6 kinase II	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR041906 all species →	Domain	Ribosomal S6 kinase, N-terminal catalytic domain	Interproscan
IPR000961 all species →	Domain	AGC-kinase, C-terminal	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR017892 all species →	Domain	Protein kinase, C-terminal	Interproscan
IPR018104 all species →	Conserved_site	Translation initiation factor 1A (eIF-1A), conserved site	Interproscan
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24351 all species →	RIBOSOMAL PROTEIN S6 KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0018105 all species →	Biological Process	peptidyl-serine phosphorylation	Interproscan
GO:0003743 all species →	Molecular Function	translation initiation factor activity	Interproscan
GO:0006413 all species →	Biological Process	translational initiation	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0000287 all species →	Molecular Function	magnesium ion binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04373	RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6	EC:2.7.11.1	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.