Gene detail

Detailed information of Ppa0G343720 in Paragorgia papillata

Genomic Location: Contig00505:1187970...1191168
NR annotation: CAB4011042.1, lin-28 homolog A-like [Paramuricea clavata]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
Q9VRN5	Protein lin-28 homolog OS=Drosophila melanogaster OX=7227 GN=lin-28 PE=2 SV=2
P72366	Cold shock-like protein CspA OS=Stigmatella aurantiaca (strain DW4/3-1) OX=378806 GN=cspA PE=3 SV=1
Q9KL16	Cold shock protein CspV OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) OX=243277 GN=cspV PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00313	CSD	'Cold-shock' DNA-binding domain	Domain	Interproscan
PF00098	zf-CCHC	Zinc knuckle	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR019844	Domain	Cold-shock (CSD) domain	Interproscan
IPR011129	Domain	Cold shock domain	Interproscan
IPR002059	Domain	Cold-shock protein, DNA-binding	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR051373	Family	Lin-28 homolog RNA-binding protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46109	PROTEIN LIN-28	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0031054	Biological Process	pre-miRNA processing	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K18754	LIN28; protein lin-28	-	Messenger RNA biogenesis	ko03019	deepkoala