Detailed information of Ppa0G344400 in Paragorgia papillata

Genomic Location: Contig00505:1989685...1993456
NR annotation: XP_028414909.1, E3 ubiquitin-protein ligase RNF114-like [Dendronephthya gigantea]
Species Paragorgia papillata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8BFW4E3 ubiquitin-protein ligase TRIM65 OS=Mus musculus OX=10090 GN=Trim65 PE=1 SV=1
Q1LZE1E3 ubiquitin-protein ligase KCMF1 OS=Bos taurus OX=9913 GN=KCMF1 PE=2 SV=1
Q9P0J7E3 ubiquitin-protein ligase KCMF1 OS=Homo sapiens OX=9606 GN=KCMF1 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0009555 (this species only)
Ubiquitin familyE3|E3 activity RING|RING · all ubiquitin genes in this species
Ubiquitin familyE3|E3 activity RING|U-box · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF05605
all species →		zf-Di19Drought induced 19 protein (Di19), zinc-bindingDomainInterproscan
PF13445
all species →		zf-RING_UBOXRING-type zinc-fingerDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR008598
all species →		DomainDrought induced 19 protein type, zinc-binding domainInterproscan
IPR013087
all species →		DomainZinc finger C2H2-typeInterproscan
IPR001841
all species →		DomainZinc finger, RING-typeInterproscan
IPR051438
all species →		FamilyRNF E3 ubiquitin-protein ligaseInterproscan
IPR013083
all species →		Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR027370
all species →		DomainZinc finger, RING-type, eukaryoticInterproscan
IPR017907
all species →		Conserved_siteZinc finger, RING-type, conserved siteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46016
all species →		ZINC FINGER, RING/FYVE/PHD-TYPEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000209
all species →		Biological Processprotein polyubiquitinationInterproscan
GO:0006511
all species →		Biological Processubiquitin-dependent protein catabolic processInterproscan
GO:0061630
all species →		Molecular Functionubiquitin protein ligase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K15697RNF114; E3 ubiquitin-protein ligase RNF114EC:2.3.2.27
Ubiquitin systemko04121deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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