Gene detail

Detailed information of Ppa0G344990 in Paragorgia papillata

Genomic Location: Contig00506:534815...560004
NR annotation: CAB4007042.1, very low-density lipo receptor-like isoform X1, partial [Paramuricea clavata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Ppa0G344990

ATGTTACCTTACTGGAGGAACTATCGTTTGTTTTACGTATTTCTTCTATTTCTTTATATCAAAGTCATTCATATTTCTGCTTCAGCCTGTGGCGGAAACGGTTTTGCTTGTGCCACTGGAAATAGATGCATACCGGACAACTTCGTCTGTGATGGCGAACCGGATTGTGACGACGAAAGCGATGAAATAAATTGTGGAAAGAAAACGTGCAATGACACAGAGTACAAATGTGGGGATGGCCGTTGTATCAAGAATGAGTGGAAATGCAATAATTTTGTAGATTGTAAGGATGGAAGTGATGAGCATTCATGCAACACCTCAACTTGTTCTGCCGATCAGTTTACATGTTACAATGGTTTGTGCATAAGTGGAGTATTGCGCTGTGATAGAATACAAGACTGTTTGCTTGGAGAGGATGAAAAAGATTGTTTATTTAATGCAACTTGTCCCTCTGGCCTCTTCCAATGTAAGAATGGTGGTTGTGTTGACAAAAACTTACTTTGTGATAGTGATGATGACTGTGGTGATAACTCAGATGAAGAGAATTGTGGAAAACCCTGCAAGCCTGGTTCCTTTACTTGTAAGTCAGGAGACTGCATTGCTGGAAATCTGAAGTGTAATGGAAAAAATGATTGTCCTGATAGCTCAGATGAGGATCAATGCCCAAAAGGTGATCATTTCTTCACTCTCCCAACAGCAAGTGGACCAAAATGTGCGGATGATGAATTCACCTGTGCTTCTGGTACAGAATGTACTTTTAAATTCAATGTATGTGATGGAGGAAATGATTGTGATGATGGAAGTGATGAGCAGTCGTGTGAAAGCATAACATGCCCATCTTCAAGTTACGTTTTATGTGATAATAATAAAACATGTATTATGAAATACAAGTTGTGTGATGGTACAGATGATTGTGGTGATGGTAGTGATGAAAAAGATGAACGCTGCAACAAACAACCCTCAACAGCAAAACCAACAACACCAGGAGCAACTTGCAAAGTTGGGGAATACAAATGTAAGAATGTGGCAAAGTGCATTGATGACAAAAACGTGTGTGACCAGAAGCAAGATTGTCCTGATAATGATGATGAATCTTCCTGCTCAAATATTAATGAATGTCAAAGAAATAATGGAAATTGTAGTCAAATGTGTACCGATACAAATAGTAGTTTTTACTGCTCTTGTAAGCATGGCTACAAATTGTTGAACGACTCCAAAACTTGTCAAGATATCGATGAATGCAAAGTTCTAGGGATATGTAGTCAAACATGCTCTAATATTGATGGATCCTACAAGTGCTCGTGTATAAAAGGTTACATGTTGACACCAGATGGCAAACGTTGCTTACCTTCAGGTGGGGCAGTGTCCCTCTTGGTTGCAGTAGGCATGGATATTAGGAGAATTTCAGCTGATGGATCAAATCTGAAATGTGTCGTTGGCAAAATTACTAAGAATGTTGTATCAGTTGCTGTACATCACAAACATAACAAGATCTTTTGGGCGGATTTATTTTTGGGCACAATTTTCAGTGCTACAATGGAAGCAGGTGAAAAGAATGCCCAAGTATTGGCAATATGTCCTTCACCTAAAGGCTTATCACTTGACTGGGTGAATGAAAAACTCTATTGGATTAGTCGTTCTTCAAAAGGTTCTGTGATAAATGTTGCTCAACTAGATGGTTCTCATTATAAAGTATTGAATACCCCCATCAGTGAAGAGACTGGTAATATTGTTGTGGACCCAGTCAGAGGGTACCTGTACTGGTCCAATCCTGGCAGGACTCCAAGTATTTCCAGAGCTCATATGGATGGCCAAAATGTTGAACATATCATTACAACCAATCTACAATCTCCAGCTGGCTTGACAATTGACTTTGTAAATAAAAAGCTGTTTTGGGTGGATTCTAAAATCAATAGTTTGGAGTGCAGTGAATTGGATGGGAGCAACCGACGTAATGTTATAACACATGGTATTAGACATCCATTTGCCATTGCAGTGTTTGCGGAGAAAGTGTACTGGAGTGAACCAATGTCAAAAACTGTTATATCAGCCAACAAGTTCACTGGCAAAAACAGAACAATTCTCATTAGACATGAAAATATCACCAGTTATGTTCCAAAAGGAATTTCAATTGAACATCCACTGTCACAGCCAAATGTTACCAACCGGTGTGAGAATGGAGGTTGCAGTCACTTGTGTCTACTTATTCCTCAAAGTTATCGTTGTGCGTGTCCTGGGAATGGTGTGTTACTTCCTGATGGCAAAACATGCAAAATGCCTGTGACCCCTAAACCATCCAGCAAACCATCCAGCAGGCCATCCAAGAAACCATCCACGAAACCATCCAGCACACCTATTCCTTCAACTAATCAAATTACTGTCAGTGGAGCTGGGCAGAACCAAGATAGATCTAAGGAATCCAATACACATATAATTGCTGGTGTCGTTGGTGGTGTATTATTTGTATTGGTGATTTTGTTCGTGGTGTTTATTTTGTGTCGAAGAAGAAGCAATGCAGGCAAAATGGGGGTGGTACACTACAGTTCGGAAATTGGTAATGTTAAAATATCGTCCGACGCCGCTAGAAATCCAGTACAAGCAAAGAAAGATGTTGACAGAGAGACGTATGTAAAGTTTGCTAATAAGAATTTCCAGGAGTACGATGGAGATGAGGAGGAAGATATTGACGATATTGGAGAAAAACAACCTGTGTTTAAACCTCAGGATACTGATGAACTTGTTGCAGCAATGGTTTGA

Transcript

Ppa0G344990

Protein

Uniprot

Uniprot term	Description
Q9NZR2	Low-density lipoprotein receptor-related protein 1B OS=Homo sapiens OX=9606 GN=LRP1B PE=1 SV=2
Q99087	Low-density lipoprotein receptor 1 OS=Xenopus laevis OX=8355 GN=ldlr-a PE=1 SV=1
C0HL13	Low-density lipoprotein receptor-related protein 2 OS=Sus scrofa OX=9823 GN=LRP2 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00058	Ldl_recept_b	Low-density lipoprotein receptor repeat class B	Repeat	Interproscan
PF00057	Ldl_recept_a	Low-density lipoprotein receptor domain class A	Repeat	Interproscan
PF12662	cEGF	Complement Clr-like EGF-like	Domain	Interproscan
PF14670	FXa_inhibition	Coagulation Factor Xa inhibitory site	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000033	Repeat	LDLR class B repeat	Interproscan
IPR018097	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR009030	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR002172	Repeat	Low-density lipoprotein (LDL) receptor class A repeat	Interproscan
IPR036055	Homologous_superfamily	LDL receptor-like superfamily	Interproscan
IPR000152	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR023415	Conserved_site	Low-density lipoprotein (LDL) receptor class A, conserved site	Interproscan
IPR044912	Homologous_superfamily	Epidermal growth factor receptor, juxtamembrane domain	Interproscan
IPR026823	Domain	Complement Clr-like EGF domain	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR051221	Family	Low-density lipoprotein receptor-related	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22722	LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0006898	Biological Process	receptor-mediated endocytosis	Interproscan
GO:0016324	Cellular Component	apical plasma membrane	Interproscan
GO:0042562	Molecular Function	hormone binding	Interproscan
GO:0043235	Cellular Component	receptor complex	Interproscan