Gene detail

Detailed information of Ppa0G351130 in Paragorgia papillata

Genomic Location: Contig00514:777241...781779
NR annotation: CAB4010797.1, gag-pol fusion [Paramuricea clavata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Ppa0G351130

ATGGTTACAACACCTAAGAAAGTTTCAGCTCCTACAGCAAATGGTAATGGCAATGAAGTTTACCAAGAGCCTCAGCCTTTAGCTCCTGCAGCAAATGGTAACAATGATGAAGTTTTCGAAGAACCTCAGGTGTCAGATTCTGCAGCAGGTGATGGTGGGGATGAAGACCCTTCCAAAGAGCCTCAGCATCCTTCCACTAGAGAAGAAAGACTCGAAAAGCACAGAATGCAGTGCCAGAATTTGATAGCATACCTGACAATGAATGTTTGCCCACCAGGTTTAGCAAAAAAAGAAGTGAGGAATATTAAAAACCAGGCTAAGACACACCAGTGGGATTCCAAAAGTGTCTCAGTGCAGCGACTGCAACCCTACTTTACTTTGATTCCAATGTCAACACTGCCTGTACAGCACAGGAAAGAACTGATATATGTTGGGGCAAAAAAGGATGCGAGGAAGAAAGTTGTGACAGAACTTGAAGAAATCTCAGAAATCCTTCACCAATACCACTCTAATCCTATGGGTGGACACAGTGGGATAAACAACACATTGGCAAAAATCTCACAGTATTATTCGTGGAATGGTATGAAAGAGGATGTGGTTGAATATACCTGTGATCGCTGCCAACGATACGAGAAATTGAAAACCCAAGCACCAGAGCTTAAATCAATAAAAGTAAACAAGGCTTTGGAATTGGTTGGAATGGACCTTATTGGGCCTCTACCTACCACTGATGCTGGATATAAGTATATGCTGACATTCACCGATTACTACACAAAGTTTGTGGACTTCTACCCATTAAAAGAGAAAGCTGCTATTGGGGTGGCACGCAGTATAAAAACATTTGTTTGCAGATGGGGTGCCCCTTGCAGACTTCTGTCCGACCAAGGACGTGAATTTGTTGCCAAGGTGAACACAGAGGTTTGCAAACAGTTTCACATTAGTCGTTCTGTGACTAGTGCTTACCATCCCCAGACCAATGGTCTTGATGAGCGGACCAACAAAACACTAAAAAACAATTGGGATGACTTTTTGGAAGAGGTTGCATTCTCAATACGGACACAGAAACAGGGGTCAACGAAGTTCAGTCCATTCTTTCTTATGTTTGGTCGGCATGCAAGAACGCCAATACAGGTAATTATTATGAACCATTACTCAGTTTTCCAACATTCAGTTGGTGACCTTGTCCTGCGTAAGGTTATGAAAAACATTGGTCGGAAGGGTGGCAAGCTAGATGCATTATGGACTGGTCCATACAGGTACAGTATCTCCACCTTTACAAAAGAAATTTCTAAACTTTTACCAAAAATTGACAATGGGGAGTGGCTGACAGACGAACATATTGACCATGCCCAAGCTGTGCTTGCGAAGGATTTTCCGTACATTGGAGGCCTACAAGCAGTGTGGGTATTTATTTCAGAGGGCTGTCAATCTGTAGGTACTCCCAAAGAGGATTTTGTTCAAATTTTAAATATTGCTGGCAATCATTGGATTACTGTCAGCAATATTGGCTGCCCTAAAGACACCATCACTATTTACGATTCTTTGTATGATGATATAAGTCCTACATGTAAAGCTAAATTTCTGAGGCAAATGGCTTACATGCTGATGCCAACATCAAAGCATGTTACTCTACAGTGGGCTGATATGCAGAAGCAAACAGGAGGTTGTGACTGTGGACTATTCGCAATTGCGGTAGCAACCAGTTTGTGTTATGGCATTTTGCCACAAGACTGTCCCTGGGAACAAGAGAAGATGCGACATCATTCATCATTGTGCTTCCAGCAAGGAAATCTCACACTTTTTCCACAATCTTCATTGGTTCGAGAACACCGACGCCACCGTCGAATGGAGAAAGCTGAAGTGTTCTGCCACTGCAGACAACCATACACCAAGGATGTCTTCATGATTCAATGCAACAGTTGCCAGGATTGGTTCCACCGGGGATGCCAAAGGATTCCAAGAAAGATTAACAAGAACACCCCTTTTATTTGTAAGAACTGTAAATAG

Transcript

Ppa0G351130

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|PHD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00628	PHD	PHD-finger	Domain	Interproscan
PF00665	rve	Integrase core domain	Domain	Interproscan
PF17921	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019787	Domain	Zinc finger, PHD-finger	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR052160	Family	Gypsy Retrotransposon Integrase-like	Interproscan
IPR001965	Domain	Zinc finger, PHD-type	Interproscan
IPR019786	Conserved_site	Zinc finger, PHD-type, conserved site	Interproscan
IPR038765	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR041588	Domain	Integrase zinc-binding domain	Interproscan
IPR011011	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47266	ENDONUCLEASE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan