Gene detail

Detailed information of Ppa0G351310 in Paragorgia papillata

Genomic Location: Contig00514:1028573...1058894
NR annotation: CAB3981888.1, Nucleolar MIF4G domain-containing 1 [Paramuricea clavata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Ppa0G351310

ATGCAACTAATAAATAAAAAAAAGAAATTCATTCAATCAAGGAAGATGTCTCGCAAAGAAGTGAGAAGAGAATTTCGCGCCAGAAAAAAAGCAAGAATACGTGCGCATTTTACAAGAAGAAATGCGGAAAAGGTATCGGATGTTAAAAAGAGCGAATTGGAACCAGAAGCTGTTGGTGGAAAATGTGCGGAGAAAGTGAAAAAGAAGAGGAGAAAGAAAAAGAAAAAACAAACAAACAGGCAACCGAATATGGAGGACGAAGCCTTCGTTATAGACCAACAATCAACAAGTATATATGCAAACGAAGATCAGGAAATGAAAGACCTTGAGAAGAAGCTTAAGTTATACCAAAAAAAGAAGTTACCCAAAGCATTTCTTGAAGAAGGTTTAAGTGATATTATTGACGTATGTAATGCTATTGAAACTGGTTCTTTAAAGCTACAAGTACAAAACAAAAAAGAAGTTGAAGGATTATCCCATGACGATTTGGGGAAGGACTTGGTACGTTATTACGATGAGAGCGATGACTATATAGACGAGTCAGAAGACGATATTTGTGACGAAGAAGGACTGACTAGGGACACAGCAAGTGATATTGACAACGATCTGGATAACAAGTTTGAAAACGAGTCAGAAGAGGACGGTGTCCTTCAAGCCAGTAGTGAACTCAATAATGAAGACGAATCCGAAGATAGCGATTGTGAAGACGAAGACATGTCAATTAAGGAGAATCCACTAAAGTCGCAAAAGAGCTCTACTGATATATATGGAGGCGCTAGTGCTAAGTACGTACCGCCTCACCAGAGGCAGCAAGATGGAGAACAACAAACAAAGAACAAACAAGTGAATGAAAGACTTAGGAAACAAGTGAAAGGTCTTTTAAATCGTTTAAGTGAATCCAATCTTTCGATGGTCAGCGGTCAAATTGAAGAGTTGTACAGGTCCCACAGCCGGAATGATCTCAACGAAATTCTGTCCAACCTGTTGATGGATGCTTGTATTTCGCCTTCTTTAATGCCTGAAGGACTCTTGCGTGAACATATGATGTTGATAGCTATCCTTAACTCGCTTGTTGGATCTGAAGTCGGGGCATTTCTTCTCCAGAAACTTGCTGTTCAGTTTGACAAGCTCCATTCTGCTGAAAATTGCAGTAACGAAGGCAAAGAAATTGTCAACGTCGTTGCTCTGTTTGCATTCCTTTATAGCTTCAAGGTCATTGATTGTACTCTTATCTACGACATTATCCGACAACTGGTGACTTCATTCCGGGAACAAGATGTGGAACTACTTTTACTACTTATACGATTGATCGGCGTCGAAATCAGACGGGAAAGCCCTGACTCATTAAAGGAAATTATTCTTGAGGTGCAAGCCAAAGCTGCTGTCGATACCGAACTGACTAACACGTCTCGAACAAGATTCATGTTGGAAACTGTAAATGCATTACGAAACAATAATATGAGAAAAATCCCTAATTACGATCCTTCGCCAATCGACCGAGCGAGGAAAATATTGAAGAGTGTGACACATTATACAGATCGCAACGACAATGCAAAACTTAGCATCTCGCTTTCTAATTTACTTTCAGTCAAGCAAAAGGGTCGATGGTGGATAGTCGGCTCTGCATGGAGCGAGAGAGAGAAAAATGATTCATCGACATTAGATGTTCACGAGACATCAGACGACATTAAAATTATGGAATTATCACGACAACAGAGAATGAATACAGACATTCGAAGAAACATCTTTTGTACAATTATGACAAGTGAAGATTATGTCGATGCTTTCGAAAAGTTGATGCGCCTAAAATTGAAAGACAAACAGTCGAGGGAAATCGTTTACGTTCTTATGGATTGTAGTTTACAGGAGAAGTCGTACAATCCGTTCTATTCATACCTTGTTCAGAAGTTATGTGAATTCAGCCGAAGTTATCGGGTAACTGTACAGTACTCCCTTTGGGATCGTTTTAAAATGGCATCAACATTAACAGACAAAAATTTGTTTAATATGGCTCATTTACTCGTCCATCTACTAGTCACTAAATCTCTGTCGTTATCAGTTTTAAAGGTGGTTGATTTTACGTCCTTAAACAAGAAGCTCGTTACGTTTTTTTCTGAAATGTTAACCCACATTTTACTGGACTATCAAGAGAGCACAATAAGGGAGGTATTTATACGAATTGCTCCACTCACAAAATTGGACACTCTAAAAGAAAGTCTAAAGTTGTTCATGAAACATTTTCTGAAACCAAAGAGATCGACTTCTACCCAAGAGCTGAACTTTAAAAAGCTTAAGATGGTAGATAAACGAAGGACACTAGAAGAACGAATTAACGTAGCCATTGATGCGTTATCAGGAAGCTGA

Transcript

Ppa0G351310

Protein

Uniprot

Uniprot term	Description
Q5C9Z4	Nucleolar MIF4G domain-containing protein 1 OS=Homo sapiens OX=9606 GN=NOM1 PE=1 SV=1
Q3UFM5	Nucleolar MIF4G domain-containing protein 1 OS=Mus musculus OX=10090 GN=Nom1 PE=1 SV=2
Q9W020	Nucleolar MIF4G domain-containing protein 1 homolog OS=Drosophila melanogaster OX=7227 GN=CG9004 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02847	MA3	MA3 domain	Repeat	Interproscan
PF02854	MIF4G	MIF4G domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003891	Domain	Initiation factor eIF-4 gamma, MA3	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR003890	Domain	MIF4G-like, type 3	Interproscan
IPR050781	Family	Pre-mRNA-splicing factor CWC22	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18034	CELL CYCLE CONTROL PROTEIN CWF22-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005730	Cellular Component	nucleolus	Interproscan
GO:0042274	Biological Process	ribosomal small subunit biogenesis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K17583	NOM1; nucleolar MIF4G domain-containing protein 1	-	Protein phosphatases and associated proteins	ko01009	deepkoala