Gene detail

Detailed information of Ppa0G353420 in Paragorgia papillata

Genomic Location: Contig00515:987146...1033787
NR annotation: CAB4002563.1, Nuclear pore complex Nup88 [Paramuricea clavata]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G353420

ATGGCGACCAATATGGCACTTTCTGTTTCAGGTGGAATGTCTTCATCTTCCTCGAACTCGTTAAGTTGGGAATCTTTCCTTCCAAATCATGGTATATTTAAAGCACTTGTCAAAGACGTTAAACTGCCAAATGAAGAACCGTATCTTGGACGAAATATCCTCGCTGAACGGGACGGTGATTTATACCTTTGGGACGACGACAAGAAACACATTCTTGTTGCAAATTTGAAGAATTTGAAGGCAAAAAACGAACGCTCGTCTAAGCTACAGACTTTGATTTGCACTAGTCCACCGCTTTTTAGCGTGAGCAAGATGGTTTTTAGTTATACTGGTACATATGTGGCTTTGATAGGAACGCATGGAGTCTGTGTCCTGGAACTTCCTCAAAAACGAGGAAAGTTTACTCAGTTTGAACATGGCAAGGATACGATCAGTTGCAGAGCTGTTCACCTTGATGAGCATTTTTTCACATGTCACCAAGCAATCACAATATTTGAAACTAAATGGTTCCCAGGCTCACCAGACGATGTTCATTTGGTTGTACTCACCTCAGATAATCGTATAAGGTTGTTTGATATAACCAAACCAATAAGTCCGCAAGATATTATTAGTGTTGGCTCCGTTCCACCAGACCAGAGTCTCTGCTCACCTATCAACGCAACGTTTGCTGAAGCATTTGGCGAGGTCGTGGTCTCCTTTGACTTTGCTCCTGCCGTCGATGTCGAACTTTCTTTTGAGAAAACGAGAACCGACTACCAAGAAATGGCTTATCCTGTTTTTCTGTTGCGAGAAAATGGCGATGTACTCTACCTGCTGTTGATACTCACAGCAAATCGTTCCTATCACGAACTTCAAGGTTGCCTATCGATGTTTCCGCCCGCTGAAGATAATTATGGCGTGGACTCTTGCTCTATTCTATGTTTTCCGACAAGTCCTGTTGTTGTTGCCATATCAACATGTAGCGGTATTATTTACCACTGTATTGCTCTTGATGCCGAGGATGAAGATACATTTGGCAAAACTTTGGACGACAGTGTCGTTGGTAGGAAAGATGAAAGCAGTGTCCATTGTTCAGCGCCCAAAGTAGCCCTTCACGTATATGAATGTATGGAGTTGGCTCTTTTACCAAGCTCGAACGTGGAGCGAAATTTCGAAGAGTCTGGTAAATTTTCTAGTGATGATAGTGAAGTTAAAGAAGAAACGTATACAGTGAAACTTTTTAAAGATCCTACATCAGGAAGTCGTTACCATTGTTATCATCCTTCTGGTGTTCATACTGTTACGCTACCTTGGCTGAGAACCTTGCAACAGTTCTGCAATGAAACCGAGCGCATTGTGAGTTTTGATCCCAATGAAGGCGGAGTGGTGCAACATTTGATTTGTACAAAGCCTGTCCCTTCTAGTTCTAGCCCGCTTAATTTAACTGGTTTTACTGTGGTTAGTGATTGGGATCTTGGGGGCACAATCATCGCTTTAACTGACGCTATGGAATGTATTACAAAACAACTAAGGTTCTTAAACCGTCCTTCGTCGCCTATGCAATCGTCAACAAACCCCGATGAGGACGACAGAAATAAATCGTCCTCTCTTCAGACATATTCTGGTGAATTTGAAAATCGCATCAAACATATACTGAGACGGGAAGTCTCTAACCCGTTAGTAAGGAGTTCCTCATCCAGTCCCTGTCTTTCCCCAAAAGACAGTTTCCAATTCTTGGCTGGCGCAACGCAAACATTTCGCCTAGAATACGTCAACAAACAAAAGCTAGCACAAGAGGAAATTCAAAGAAGGATTGAAATCCTAAGGGAACAGAATGAGAAACAATCTGAAGACGTAGCCTCGATCCACGAAGAAAAAAGTATGCTACAAGAGCGGTTGACGATGTTGGCTGAAAAGTACGAAGATACCAACGACAGACAAGAGTATATTTTAAAGAGAATTCACAAAGTGTTAGAATTTATTCAGTCTCGACAACCAACTCTGTCAGATGCAGAAGTTAGAATGAAAGAAGAACTAACACAAATATCGCGTAATATTCAATCCTTTCAAAAATCTTTTGACCAGTTGCAACACAAACGGAAATATCTCAGAAGTGAACGTGATAAAACGTGGGAACCGAAAGCCAGGACACTGACCGAGACGCACAAGAAGCAGTTGAAAACGCTGTTGAAAGAAGAGGGGGATGCTATCCAAGACTTAGTGAAGCAAGTGAACAATTTGAAACTCCATGTTGGATTTTGA

Transcript

Ppa0G353420

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O08658	Nuclear pore complex protein Nup88 OS=Rattus norvegicus OX=10116 GN=Nup88 PE=1 SV=1
A2CEI4	Nucleoporin 88 OS=Danio rerio OX=7955 GN=nup88 PE=1 SV=1
Q99567	Nuclear pore complex protein Nup88 OS=Homo sapiens OX=9606 GN=NUP88 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004306 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10168 all species →	Nup88	Nuclear pore component	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019321 all species →	Family	Nucleoporin Nup88	Interproscan
IPR037700 all species →	Family	Nucleoporin NUP88/NUP82	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13257 all species →	NUCLEOPORIN NUP84-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000055 all species →	Biological Process	ribosomal large subunit export from nucleus	Interproscan
GO:0000056 all species →	Biological Process	ribosomal small subunit export from nucleus	Interproscan
GO:0005643 all species →	Cellular Component	nuclear pore	Interproscan
GO:0006406 all species →	Biological Process	mRNA export from nucleus	Interproscan
GO:0006606 all species →	Biological Process	protein import into nucleus	Interproscan
GO:0006913 all species →	Biological Process	nucleocytoplasmic transport	Interproscan
GO:0017056 all species →	Molecular Function	structural constituent of nuclear pore	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14318	NUP88; nuclear pore complex protein Nup88	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.