Gene detail

Detailed information of Ppa0G358310 in Paragorgia papillata

Genomic Location: Contig00524:1963968...1980251
NR annotation: CAB4000310.1, src kinase-associated phospho 2-like [Paramuricea clavata]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G358310

ATGACTGGTAAAAATAATTGGACAAAGTACCGAGCTGTTATCGACAAGAACCAACTTCTCCTAGCAGATGCTGAAGACACGGTAATAAGCGACACCAACATGCTTATGCGTATTGAACTGGATCCAAACCTACAGTTCACTCTTTTAGCAAGAAAGAGCCATGATTATCGTTTCAAAATGTCAAACGGGTCAACGCAATACTTTTTGAAAAGCCCAACGGTATTCCAAAGGGACCAGTGGATTAAAAACCTGACGCTTGCTTCGCGTAGCGTTTGTCAGAATACCTGTGCACGGTGTTGCACGAAGTACTCCCGAAGTAGTTCCGATGTTTCTGAAAAGGAATCAAGACCGGTATCAAGATTAGAGCAAGATGATGGCGAGGTCGACATTGTGGATGATGTGTTTTACGTTAAGATGACTAAGAATGAAGAAGCCATGACGTTTACCAATCCTCAGTCCAAGACCGAGGACCCAGAACCATCTGAAGTCACCAATGATGACAACGGAGCCGCAGAGGCATATGAAACCCGCAAGGATGATGAAACGACTGAGCAACTCAGTGGTTACTTGAAAACGAATGCAGTAAAAGACAAATGGAGTCGATTTTGGGCAGTCATAAGAGGAAAGAAGTTGTTCCTGTACGCAAACGAGAGGGACCTACAAGAGGTGGAAGCAATTGAATTGTCGTCAAACACGCAGTGCCAAACAGCCAAACGGAAGTCGAACAGCTTTAGGTTTTCTCTGATCACAAGCGCGTCGTCCTCGTACGAGTTTAAGTGCTTATCTGCGCAGCAGAGACAAATGTGGATGACTGCGTTGGGAAAGGTCGCGATGGAAATCGAATCGAGCGTTGCTATGGTCGCTGATAGTCTTTCAAATCAGTCGTCATCGATGGTTGCGAAGCAACAACAACAACAGCAAGACATACAACAATCACAACAGCAACAACAACAGCAGCAGCAACAACAACAGCAAGACATACAACAATCACAACAACAACAACAACAGCAGCAGCAGCAACAACAGCAGCAATACATACTACAAGCGCTACAGCAGCGGCAGCAACTACGTGAACAACAACATGAACAACAACAACAACCACACGAAAACGAGAATGATTTTTATGACGTTATTCCGTGCAACGAGGATAGCGTTAAGAAACAACAACAACAACAGCAGCAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAGCAGCAACACCAACAACAACAACAGCAGCAACAACAACAACAACAACAACAGCAGCAACAACAACAACAACAACAACAGGACGAAAACGAGAATGATCTGTATGAGGTTATTCCGTGCAACAATGACAGTGTTAAGAAACAACAACAACAACAACAACAACAACAACAACAACAACAGCGTGAACAACAGCAACATAGTGTTAAAAATTCCAACGAAAACAACAAGCAAAACCAGGCCTTTGACCCACCGTGGAACTTTGAACAACACGTTTCGGCTATTTTGCCTCTCGTAAACGGTGGAGACTCTGATCTTGCTTTGGCAGGAACGGAGATGGAGAAAACAGACGAAAATGTGACAGAAAAAGATGGCGCGGAACCATCGCTTGTTTCAAGAGGGCATAAAGACACTGAAAAGTTTATCACTGATATACTTGGAAAGATTGATTTACCACCTGAAGTTGATAAACAACGTCTTGAGTTGTCTCAGAGACTTCGGAAGTTATTAAATATAACCGATGAAGTTCCCAAGAGGGAACCGCAAGATGTGGAACCTGTATATGACGGTGACTGGGTGAAAAAAGCATGTCATATGAGGTGGAAGGAGGAAATGTATGGTGATGTAGCAATTGGAGATGCCGATCAAAATGACACTCAAGAAACCTACGATGACGTTGCAGCATTGTGTGTAAAATATTTGGACCATCCTAAAATTGATGCTCTTTCAAAAACTGATCCCCAACCTGAAGAAATGTATGATGATGTTGCTAGTGTTGATCCTAGTATTCATAGTAAGTCATCTACTGCTACGTCAGATACTCTTTCATTGGATACGCAAAATGTTGGAGAACCGAAGAAAGCATCAGAAATACAAAATAAAATTTACGAAGGCTTCTTGGAGAAGTATCGAGGCAAAGGTTTAATGAAATTATCGAGATGGCAACGGCGTTACTGCATACTCACCTCCTTGGCTTTCTATTACTACGCTGACCCCAAGGACAGCAAACAGAAAGGAACAATAGTACTTCCGTCCAGCGGTTCCACACTACAGGAAGGTTCTCCGACTCACCCCGAAGTGAAGGATGGGAAATTATGTTTTGAACTTGGTAACGCTGAACGAAATTTTTTGTTTAAAGCTGAGAAGCAAAGCGATCTCGAGACGTGGATTCGACATATTAATACGGCTTTAAAAACTAAATTAACGGACGAGGATTCGAGCATAATGCGAACAAAAAGTATCCATATTGCAAGAGAGGAGAAGGAAGAAGAAGAGCCAGAAGAGAGCGAAGATCTGTACGAACTGGTGGACACGTATCGAAAGGAAATAGAAACTGCTGTACCTGCAATTGAAACGGAACCCGAATTCGAAGGAGAACTGTACGAAGAAACTGAGCAGTTTTCTATCAAAGAATCTTCCGGATCGTCTAACGAAGGTCCTGCTTTACCGTCGAGAAAGTCTGTTGAAAAGCATGAAGAGTTAGAAGACTATGAACTGCCGGGTGTAACTGGCAAACCGAAAATTGAATCGCCTGAGGAATATGAGCTGCCAGGTGTGGTTCCAAAACGTCAGTCTAATTCGATCTCAGATTCCCCCATGTTACCTCCACGTAACAGTCCATCTACAAATGGCCCTCAACTTCCTCCTCGAATTAATGGTAAGTCGGCCTCAGCTTCTAAACAGCCGCCTGAAATACCCATTCGTACCACTCCCCCAACTGCCAAAAAAGCTCGGCCGCCTTCCCCCAAGCCCGCTGCCACCGAAGAGACTAGACCCAGCCCTCTTGCAACACCCGAAAGAAAACCGGAAGTCGTGCCGGAGAGAAAACCGGATTTTGATTACGCGAGAGTTTACGTTGCTATGTGGGATTGCTACGCTGATGACGAAGACGATCTGACTTTTTCCAGAGGTAACCAGCTTTACATCCGGGAAAAGATCCCGAATAGCGACTGGTGGGTTGCGTCTCTGATGGACAGCCCGGAAATTCGGGTTGGTTTAGTGCCGCGAAATTACATTATGGCTGCGTATGAAATGTGA

Transcript

Ppa0G358310

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q1KKW7	Src kinase-associated phosphoprotein 1 OS=Takifugu rubripes OX=31033 GN=skap1 PE=3 SV=1
Q920G0	Src kinase-associated phosphoprotein 2 OS=Rattus norvegicus OX=10116 GN=Skap2 PE=1 SV=1
O75563	Src kinase-associated phosphoprotein 2 OS=Homo sapiens OX=9606 GN=SKAP2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0017413 (this species only)
Ubiquitin family	UBD\|Other\|SH3 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00169 all species →	PH	PH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR052828 all species →	Family	Negative elongation factor A domain-containing protein	Interproscan
IPR027267 all species →	Homologous_superfamily	AH/BAR domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13328 all species →	NEGATIVE ELONGATION FACTOR A NELF-A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0032021 all species →	Cellular Component	NELF complex	Interproscan
GO:0034244 all species →	Biological Process	negative regulation of transcription elongation by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Ppa0G358310.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.