Gene detail

Detailed information of Ppa0G358900 in Paragorgia papillata

Genomic Location: Contig00524:2980219...2985007
NR annotation: XP_028415884.1, 60S ribosomal protein L10-like [Dendronephthya gigantea]
Species abbreviation PPAPI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O61231	Large ribosomal subunit protein uL16 OS=Drosophila melanogaster OX=7227 GN=RpL10 PE=1 SV=1
O96647	Large ribosomal subunit protein uL16 OS=Bombyx mandarina OX=7092 GN=RpL10 PE=2 SV=1
Q7ZV96	Large ribosomal subunit protein uL16 OS=Danio rerio OX=7955 GN=rpl10 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007791 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00252 all species →	Ribosomal_L16	Ribosomal protein L16p/L10e	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001197 all species →	Family	Large ribosomal subunit protein uL16, eukaryotes/archaea	Interproscan
IPR047873 all species →	Family	Large ribosomal subunit protein uL16	Interproscan
IPR016180 all species →	Domain	Large ribosomal subunit protein uL16 domain	Interproscan
IPR018255 all species →	Conserved_site	Large ribosomal subunit protein uL16, conserved site, eukaryotes/archaea	Interproscan
IPR036920 all species →	Homologous_superfamily	Large ribosomal subunit protein uL16 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11726 all species →	60S RIBOSOMAL PROTEIN L10	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000027 all species →	Biological Process	ribosomal large subunit assembly	Interproscan
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0022625 all species →	Cellular Component	cytosolic large ribosomal subunit	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02866	RP-L10e, RPL10; large subunit ribosomal protein L10e	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.