Gene detail

Detailed information of Ppa0G362580 in Paragorgia papillata

Genomic Location: Contig00529:2399939...2413532
NR annotation: CAB4001421.1, calcyphosin-2 isoform X1 [Paramuricea clavata]
Species abbreviation PPAPI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G362580

ATGGCCTTTATGGACTTATCTGTGAAAGGGAAAGCTAGTCCAAGACACGAGCGTCCATCCAGTGGAAAGAGATCAGGATATGGTAGTCAGAATGTTAATACAAAAGCTAATATATTTGGAATAGCTGACTCAAGTGTTAAAACACAACATCAGTCTCCTCAAGATATAGCCAGCAGAGATAGTGCGAGGAATGGACAAGCAAGTCTGAAATATAAGACACCAAATGCTCCTAGAGAGTCTGGGGTGGTGTCTATTCCATCTTCAGCTGGTGTGATTACAAAATCAGAGTTAGCAGCAACAAAGAAAAATCTTGGTATTCAGAAAGCAGATCAATCAGAATGCAAAGAGTTTCAAGTTGATGGAAAATGGTATGTGGACAATCCCAGAAGACCTCGATCAAGAAAAGCTCCACAAGGAGTACCAAGATTGCAGTTAGGTGCACTTGCTGATAAAGACGATGAGTTAAGAAAGCCACTTTCCAGTCAACCTCATAATTTGGCCACACCAGATTCACAAACAAGCGTCAGCTGGGGTACACCAGTTCATAATCACTACTATGACCATCGCAATGAAGAGAAAAATTATCAAATTTGTAATGAAGAACCTGGAGAAAGATTGTTGTCAGCTCAACGAAAGAAACCCACTGGAATACCCGACTTAGATCTTCAGTTATCTCATAGCGGCAATGAACAGTTTAGAAAGGCTCTGCGTGAAAGGAACAAACTGGAACAAGAGAAAAAGGGAAACGCTGATGGTGATGTTGCTCAGCCATCGAGTATTCAACCTCAGAGAGAAGCAGAAAGGATGATAAAACTTGCTGATGAAAAGGCAAAACTTCGATTGACACGAAAGAATGAGATCATTGACGAAGCACTTTTCGGCGACGAACTTACAAAGGAAAAGACAACAAATTCTGAAGTTGTTGCGTCATCATTTTTTACTCCTGAAGTTGGACCAAGGGAGAGAAGACATCAGGCATTGTTTAACAGGAATCCAACTGCAACTACGACAAATTCAGAGAGATCGTTATCGCAGAGGTTGCGTTTTTCTGCCCGAGTGTTGAGTAAAGATGGCCATGACGCTCATCGAGAACTGAATGGATTCTTTTTTCCCGGAGATAATACGTTGACTGTTTATGAATTCAGGCAGTTTGGAGGAAGATCCTCAGCCCTGCCTTTCATTCAACGTGGTACATACAGTCATGCCCGAGGAAGCATAAAAGATGAACCGTACGCTATTCAGGACATAACGGTGGGCAATGATTTATTGTTTGAAACAACAGAACAATTATCTTTACCAGATAATTTAAAACGCAAACCTTATGTTATACTTCGTATCACTGATGTCGATAAAGAAGCCAGGAAGAAACTAGCGTTTAGAGATCGACCATCTCCCATTGGAGTTGTGTCGTCGTCACATGATTTACTGCAAAGATCGCTGGGCAAAGATGATGCCAAAGACAAAGAAATAATTTCAAATGTTAAAGCTGCGGTAAGAGCTCAGTTGAGGAGGAGAGGAGTGAAGTCTATGACTGCTCTGGGAAGACATTTTCAAAATTTGGATAACGCAGGAAATGGAGTTCTGGATAAAGAAGAATTTAAAGAATCTCTCAAAAAGTTTAACATTGTAATACCTCCTGAAAGATTTGATGAAATATGGAAGATCGTAGACGCCAATCACGATGGAGTGTTGGATTATGGTGAATTTACAAGAAACTTTATCGGGGAAATGAATGAAAACAGAAAGGCACTAGTTTTGAAGGTGTTCAGGAAAATGGATCCCAATAAACTTGGTGTGGTAACTTTAATGAATATGACAAAGTTTTTCAGTGCTCGTCAACATCCTCATGTCATATCAGGAAAGGTTACAGAAGATGAGGTTCAAGAGCAGCTGTTGAGCACTTTTGACCATTGTAAAAGAAAAGGAGAAGTAACGTATGCTGAATTTGAAGATTATTTTGAAGGCCTCAGTTTAACCATTGACGATGATGAAGAGTTTATAATGATATTGAGGAACTGTTGGGCAATTTGA

Transcript

Ppa0G362580

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BUG5	Calcyphosin-2 OS=Mus musculus OX=10090 GN=Caps2 PE=2 SV=2
Q9BXY5	Calcyphosin-2 OS=Homo sapiens OX=9606 GN=CAPS2 PE=1 SV=3
Q9GKR6	Calcyphosin-2 OS=Macaca fascicularis OX=9541 GN=CAPS2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005773 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13499 all species →	EF-hand_7	EF-hand domain pair	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051581 all species →	Family	Calcium-Binding Signaling	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR34524 all species →	CALCYPHOSIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23909	CAPS; calcyphosin	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.