Gene detail

Detailed information of Ppa0G365350 in Paragorgia papillata

Genomic Location: Contig00531:1464909...1481316
NR annotation: XP_028398941.1, conserved oligomeric Golgi complex subunit 1-like [Dendronephthya gigantea]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G365350

ATGGCGGCGAAATTGTCTTCTTCGAGTCCACCCAGCTCGCCACGTCATTTGGCCAGTTTATCAAGAATGGGCTCTTGGGATGCCGAGGAGGACACTCAGAATTTGTTTCAAAAACACTCGGTTGAAGAAATAAGAGAATTGGAAAAGAGAGCGAGAGGTGATATTGAACGGAAGAAAGAAGAATTGCGTCTTATGGTTGGTGAAAGATATCGGGATTTAATAGATGCTGCTGACACCATTGGTGATATGAAAGATTGTTCTAACAAGGTGAATGATTCAATTAAGACTATCCAAGGTAACTGCAAGCATCTATACCAAACTCATCAATCACGAGGCGTTTCTGGACAGATTGCTCCACCTTCTTTGAATCAGTCAAAGTCCAGGTTTTATTCCGTGGCATCTCAAATGAAACTCCTCGTCGATACCCCAGAAAAGGTGTGGAATGCTTTGGAACATCATGAATATCTAAAAGCAGCCCAGCTTTATTTGTTGGCCCAGAATATCGTGAGCAGTCTGCATATTGACACGGGAACCAGTGCTCCTTCCAAGTTGTTGGCGTCTTTCCCCATTCTCCCTCGGCAATGGTCTTCGATCAGTCACTTCAAAGACTCGATTCTACAGGGAAGTCGAAAGTTACTTCGAGATCACACACAATCTGAACAGACTGTGGCCGAGTGTTTGTGCGCAATAATGTTTTTGGAAGATAGTTCTCCACGTCAAGTATTTAACGAGTTTCTAGTTGCGCCCACTGGTATCAAGACTCAGTTGTGCGAAGTCGTCAGACTGGTTATGTCAAGTCTCTACCAAGTGTTTGTTTTGTTCAATAGTGAAGATACCGACGAGTCTGAGACATCAGGAAATGCGTCGCTACTATTTGAAATGATTAGCAAGATGACTTCAAGATCTGATAGCTCGACATCCGAGGGAGAATTGTTGAAGCAACTCTTTGGTCAGGACTTTGACCTGGCTTTGTTGCGACATCTTCCGGCTTCTGTTGCAGGATTTCGACCTCGACTGCGAAGTATTTCCTCTTATATAACGCAAGAGTACATTCAGAATAACTGCAAGACTTGGTTTCAAAAATGTGCTGAAGACGTTAAAAAAGGAATGGATAGTTTTCTTCAGTACGTTGGAACTCTTAAAGGACTTGCTTCTATTCGAGACGCAGTTTGGGACCTGGTTAATCCAAGTGTGGATAACGGCACAAGCACTTATCACAATGCAGTCTTGAGGAAGTGGGAGGAGGTCACGTCAAGTTGCCTTGGTAACAAGCTGTCTCTTTGGCACGAACTGTTCCGAGATGAATTTGTTGCTCGCTCCAAGATAATATTACATGGCCAACTCGAAGCTCTGACGTCATCGTGTAAATCATCAACAATCAAGGCTCTTGAAGAATTGTGCCTCCAGGCCTCCAAGCCTGATCGCAGTGTTTTGTGGGAACGGGATCTTTCGTTATACGTGTGGCATGAAAGTTCTACCGACCTGCCATCCAAGGCGGGGTGGACTGGGAAACAGCGCGATGGTGACGTAATGTGTGGTGAAGGTGGCCTATCATTAAAGACTAAGGCTTGCACACCAGTGATACAAGGCACTTCTTCAGAGGATCGGGAGGGACCATTCGACAGATATGGAGAATCAAAAGAGCTTGAAGAGTTTCTACAAACAACTTGTTCGGATGTAATAAGAAGTCTTCTAAGCCATTTCGACTCGCTTCTCTCGTCGTACAAGAACGAACTAGCCACGTATTCGTGGGACCAGCCACTTTTCAGAAAAGACACTCCTGCTTTAATACTTGCTGTTGACAGAGCACTGCTTCTTGCGAGGCTGTGTCGTGGTCTCTCTGACTATTGTGCCAACCTTGGAGAATTAATGGGAGAGAAAAAAGAAGAAAAAACTCGAAAACCAAGTGGTAAAACAAGTAGCAAAATGCAGGAAATCAAGGAGCGTCTCAGAGCAACTTACTTAAGTGCTTTCAGCATTTGGTCCCAGTGGGTTTCTGCAATGTTTCGTACATCTTTTCAAACCTATCTACTCAATGGTCAAGGCCCCAACGCTCTTCTCTCAGCAACGAACTGGGACGAGATTGTAATCGATGAAGAAACAGAGGCGGGTCAAAAAGTTCACTCATCTATTCACGTTCCGTCGCAGGTCTCTTCGTACGTGACCAATCTCTTGTTCAGTCTCTGCGAAGAGTTGAATCGTGTAGGAGGCCACGCTCTTGACAGCAGCAATTATAAACCGAGATTTGAAAAGGTTGTTGAACAGTTAGAAGATATTGTGGATCCTTTTGACTTGAATGTTTTTTCTCCTTATCTGAGCAGCAATTTAAACAAACATCTTCAACGTTGCGGGGTTTTGTTTGGTGTTCTTCTGAGTATTGATAAACATTCTCAGTTTTATGGTATGCCTCAGAGACCAAGCCGCGGTCCCCAAGACCAACACAACGTCATGCCCATCGCAGTAAACCCTGTCCGCTTTACACTCTTACCACTTAGCTCACATCACGTTGAGAAACATGACGTTCACAGTACAAAGAATCGTGGGGAATCCGAGGATCCTGAGAAAATCCCTTGTGATCTACCGTTTTACAAGCACCAGCAGTTTGTCATGAGTGAACTTCTGATTGATACTCGAATACGCGATTGTTGA

Transcript

Ppa0G365350

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Z160	Conserved oligomeric Golgi complex subunit 1 OS=Mus musculus OX=10090 GN=Cog1 PE=1 SV=3
Q8WTW3	Conserved oligomeric Golgi complex subunit 1 OS=Homo sapiens OX=9606 GN=COG1 PE=1 SV=1
Q9FFF3	Conserved oligomeric Golgi complex subunit 1 OS=Arabidopsis thaliana OX=3702 GN=COG1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004367 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08700 all species →	VPS51_Exo84_N	Vps51/EXO84/COG1 N-terminal	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR033370 all species →	Family	Conserved oligomeric Golgi complex subunit 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31658 all species →	CONSERVED OLIGOMERIC GOLGI COMPLEX SUBUNIT 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0006891 all species →	Biological Process	intra-Golgi vesicle-mediated transport	Interproscan
GO:0017119 all species →	Cellular Component	Golgi transport complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20288	COG1; conserved oligomeric Golgi complex subunit 1	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.