Gene detail

Detailed information of Ppa0G366890 in Paragorgia papillata

Genomic Location: Contig00531:3157749...3177185
NR annotation: XP_028416799.1, leucine-rich repeat serine/threonine-protein kinase 1-like [Dendronephthya gigantea]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G366890

ATGGCTATGGATAAAGAATTTCTGAATGCGTGTGAAACAGGAAACTTAGATGAAGTCTTGCAGATTTTATATTACCACAATGATGGTGAAATAAGTCTTTTACAACAGGATCCAAATAGTTTAGATCACATGCATTATTTTCATGCACTGTGTTTCCATGGTCACCATGAAATAGTTGGACAACTGTTTGTCTTTGATGTTGATGTGAACTTAAATTCTCAATACGGTACACCACTATCTGTTGCTTGCCAAGGTGGTCATTTGAAAACTGTTGAAGTGTTGATCAAACATGGTGCTACCATATTTGATCCAAATGCTGTAGAAACACTCTCACCAATCTTCCAGGCTTGTAAGCATGGACATCGTGACGTTTTTATATACTTAATATCTGAAAAACCAGATATTATTTCAGTGCTTGGACCTCGTCTTCTGGTACAGGCTTGTCACGATGGACACCTGGATATTGTAGTATTGCTTGTATCGAAAGACATTGATGTAAACGGTGCCTCGGTTGCAGATTCACCAACCAATGCATGTATCTCATATGAATCCATGTTAGAAAGCCCTCTACATGCTGCATGTTCTCAGCGCCATGTTGAAGTTATCGAGTACCTTCTACAAGAAGGAGCTGAAGTTACTGTTGATTTAGTGGAACACTACTACGAAGTACTTGGAGAAGCTGTTTCAAGACACCAGAAAGAGAAAGAGAAAGAACATGAATCAATGGAGGCAGATTTTTGTGCTGCAAATTTCTATGCAATCCATGACAGTTGGTTTACGCACTGCTCAAAACAGTTGGTTTCAGTTGATTTGTCAAACAACTATTTGCAAAGTATCCCTAAAGAGATCATGAACTTACCATTTCTGAAGGAAGTTGATGTATCAAGCAACAGTTTGTTTCATTTGCCTGAAGTTGATGATGTACATAGCTCAAGGTTAGAGGTAATCACAGCTTCTTCCAATGGCCTCACTCATGTGCCCCTGTCGTTTTTTAACCTTGAAAGCTTGCTTCACTTAAACCTAGCTAACAACGCCATAACATCATTACTCAATATTCAAGATGGAGAGTGTTGCAGTTTAGAAGAAGAAGATGCACATGACGATGTTGTTTGGCAGTGCTATTCGTTAAAGTCTTTAAATTTGGCCAAGAATGAATTAACATCCATTCCTGTGGCAATTCATGCAGCAAATAGTTTAGAGAAGTTGCAGCTTTGTGAGAATAAGTTGACGTCATTTCCAAGAGGGTGGAAATGCCCGCTGCGAATACTAAACCTTGCCAAGAACGAACTCGTGGATTTTCAGCAGTCGGTATTCAACACTTGGATTAAGACTATGGATGATCTGAACTTGAGTTCTAATGAACTGACAACAATATCTTGGGATATTTGTCAACTGCAAACTTTACAAAAGTTGGACTTAAGTAAGAACAAGATAGAAAGCATGCCTCCAAAATCCCACTGGACGTGTACTAATTTAAGAAGATTAAATCTAGCGAACAACAAACTCCGTGGTATCCACTATTCTGTTGAAGTTTCGAGTCCTGTCAGGCCCAAACGCTTTACACTAGCGCGTTCACCATCGTCTGAAGAACGTCTGTGCATAGAAGATGACTTTCCTTACGAGGTTTTTGGCGAAACGTTAGAGTATTTGGATCTGAGTAACAACGAACTTTGTGCTATTCCAAGTTCTCTTTGCCAGTTTAAATCCTTAGAGGAGTTAAATCTTTCAGGCAATCGTAGTTTAAAGACGTTACCTCCTGAACTTGGGAATCTCACTGAGTGTTATCAACTGGGACTAAAAGGTCTCAATCTTAGTTCATGCATTCCAAAATATGCCAAATCTGGAGGAGGTGTCTCATCGAAGGATATTCTAACGTATTTGAGAGCAAAACAACGAAAATCGGTTCCATATAACAGAATGAAATTGATGGTCATTGGTCTTCAGGGGCGTGGTAAAACAACTTTGCTTGCAGCGTTATGTAACAAACCTCTACCTCCAAATATCTCCACCGTCGGCATTGTTGTGGACGAGTGGACTATCTCAGGCTCACAATCTTTCTTGGAGAAGATGACGATCTTTCCTAAGAAAGAATCACTTCCCAAGACCAATCCTAAGATTACATTCAGCACGTGGGACTTGGCGGGACAGCATATATACTACTCAACACATCAATGTTTCTTGTCTTCGAACACATTGTATCTTGCTGTTTGGAACACTTCTCATGGCGATGAAGGAATTGATAAACTGAAACCATGGCTTCTTAATGTTCAGGCCCGTGCCCCAGGCTCTCATGTTATCATTGTTGGCACTCATGCGGATCTTCTGCCTCAAAAGACCAAAGCAAAACGAAGTGATGAGCTTCGTTTGAAAATCGGCAAACGGTATAACAAGAAAGGCTATCCAATCATCAAAGGAAACTACGTCGTTTCTTGTACAAATGGGGAAAATATTCCCGAGCTAAGAGAAGCTATTTACAAAGCTGCACTGGAATTGAAAGAATCAGAAAATGCGGGAAAAGGAGAGTCGCTGATTGGTCGAAAGATTCCTTTGAGTTACTTGAAACTGCAAGCAAACGTCATCAAAGAGGCGGAGACACGCAAAAAGGAGAACAAACCTCCCATTCTAAATGAGGAACAAATGCTTGAGCTAGCAAAACAAGATCCTAATAACGATATTTATGGAAGACACGAGCTTGTTTTGGCTGCTCGATTTCTTCACGAAAATGGTGTCATTCTTCACTACAATGATCATTCCAGAGGCTTGGATAAGCTGTATTTCATTGAACCTGGTTGGCTGTGTGAAATAATGGCATTACTAGTCACTGTAAAGGAAACTAATGCATTCGTAAAAGGAGGAATTATCGAAAGAGCCAGTGTGAACTTGCTACTTAAAAATCCAAGACTGCCGTCAAAATTTATAGAACAGTATATTCAATTAATGGAGCGATTTGAAGTGGCATTGACGTTAGATGAACATCGTTTGTTGGTACCTTCCATGTTACCTCGAGACAAACCTGGAATGATGAACGAAGAGAATTGTCAGAGTAAATCATCCGATGATCTAGACAAACACCATTCACGTGAAGAAACAGTCAAGAAACCATCTGAGTATCTGAAAAGACTTTACAAGATGAACTACGTTCCCAGTGGCTTCTGGAGTAGGATCATAGCTCGTCTTATGATTGCTGTTCAAAGATGGGGAGCCGAGGAGGGACTTGGTGATGAACTTATTTGCAACGAAGGCGGGAAAGCTGTTCGATCATCCAACATGCGTCCAGTCCCCCACGGTTACACCATGTTCTACTGGCGTGAAGGAATGGGCGTGTTTTACGAAGGTGGTCATTTATTGGTGGAATCCTACAGAGAGAAGGAAAGTAATATTAACAATGGAATGTCGGAACACATTGAAGGAGTTATGGTGACTGTGTGTTCCACGGAAAATGATTTCTCGGTTTTGGGATTTGTTACAGATCAAATTAATTCCCTTATTTCTGAATGGTACCCAGGATTACAAGAATGCGACAAATATGGTATTCCACTTGTTCGTCACACCATCCCGTGTCCCACGTGCGCGAAACGTGCCAAGCCTTTCCCACCACTTCGCAGATCAATCTCATCAGAAAGTGTTCAATCATTAGACGAGAACAAACCCCAGGAATTCTCGTTGACTGAATGTGCAGCTGCAGCAGTTGGCCATCACGAGATATCTTGTCCACATCACATTGACGAGCCAGTAAAACTGCACAGCCTCGTTCCAGATCTCTTGCTGTCAGACTTACCAGATGAACTCTTAATTGACAGTAAGGTTCTGCTTTTCAACCCTGTCGACGAAAATCGTCTTGGATCCGGAGGTGCTGGGGAAGTGTTTTTAGGAAGTTACAAGAAACAAAGGGTTGCTATAAAGAGATTTTATTCAACAAAAGAATCTTGGACCGAAATGGACAGTGGTATAGGTTCTGGCCTAGGTTACCTTGGCAACAGAGGAGGTAGTCGTCATACTGATGGTGGTTCTATTGGTAGTCGTCGTGTTTTTAAATCGAGGATTACTAATATAGAAGAGGAGCTAAGGAGAACTAGAATTCTGTCTTCTTTCTGGGAACTTCGGCAAGAAGTATCTGTGTTAGGTCGTCTTAACCATCCTTGTGTGGTGGCGTTGGTTGGAGTATGTGTATACCCGCTGTGCATCGTGCTCGAACTCTCGCCTCTGGGCAGCCTCTATTCCATCTTGGAAACTGAACTGAAGAAACGAGAAGCGGCTAGATTTCAGAAGGACTCTCAGACGTCGATTAATGTAAGAAAGACAATCTTGGAACGTGATCTCACTTACAAGATTGTATACCAGGTCGTTCATGCCTTGTGTTACCTTCACGGCTTAGGGATTATCTACAGAGATTTAAAATCTGATAATTTATTGGTGTGGACGCTGGACAAGGATGCCTTAGTTCATGTTAAGCTTTCTGATTATGGAATTTCACGATTTGCCACGCCCCAAGGAACGCTGGGGGAGGAAGGAACGCCTGGGTTCCAGGCCCCTGAAGTTCGCACTGGATCAATATACAACGAAAAGGTTGATATCTTTTCCTTCGCCATGGTAATCTACGAAGTCTTGTCAGGATTTCGACCTTACTACGAATGTCGTTGTTCGTCTCAAATCAAGAAAGCTGTTCGTCGAGGTGTTAGACCTTCGTTGAAATGTTGGAAGGAGTCAATAATTAGTCGTCCTTCTGCCAACAGTATTCTTGAACAAATGCAAGATCCTTCGTTTCTTTGTCTTAAACGAGTTCTCCCGTACGCTGACCAGAAACCTCGCGCAAACATCACGGCGTTAATACCTTTGACAACTGAAGATCAAGTTTTCAGCGACACGGGGTCATCCAAGGGTAGTCAATCTGTTTTGTTGTGGGGTGGTGAAAACGAAGAACGTTGTTTTTCCGTCATTGATTGCGAGACCGGGTTTTACCAAGTGACAGAAACACTATGTCTAGGACCTCGAGTGGCTTGTTTGGCTAAAGTTGGGGAGCGTTATTGGCTTGGAACTGAGGCTTCAGCCATTGAAATATTTGGTCGTGCTACACCTGCTAGTGATCTAAAAGTTCTGTGGTCAATCAAACTCAAAGCTCACGTGTTAGCTCTTGAAGTAGAACAGTACACGAATAATAGCTCAAACGATCGTTCCGCTTGGTACGTTGGAAGAGTGTTTGCTTGTTTAGCCAATGGTACTATCGTCGTTATATCTCGTCAAGAATTCCGTAAAATCTACTCCGTCATGACGACCGTTGAAGTGGGTGACCGAGAATCCCCCGCCTGTTGTCTAGTGTTCGTCAAGGACGGCGATGAATTGTGGGTAGGATGTGGTAATCACGTGTCGATAGTTGATGTAGATAATCTTGAAATCACTCATAAGTTTCGTGCTTATATTCCTAGCCGGTCTAATGTCCGCGCTATGGCAACCGACGGTTCATCCGTATTTACCATCAATCGTCAGACGTCTTATGTACGTCAGTGGGACGTTCAGACTCGCGAGTTGCTTTATAGATTTGACTTTAATCTAGAAGACCCACGAGGACAAATCATCGCTCAAAAAGTTGTCCCAAATAACCATCTCTCAAAAGGCGGCAGTGGCGTCAGCACCGAGGCCGAAGATGACTTTCCTTCGCCAGCTAACCTTGAGAATGAGCCTGAAGATCCACTCAATCAAAGCCAATCTCCTGTCCAAAATGATCCTGATGATTCCCAAATGCTCCCTGATGTACCAGATATCCAGCGATTACGTGGTTACCCGATGCGGCAGCCGTCGTTGATGCGTTCCATGAGGCGAGGTAGCTCAAGGAAGCTGTCACGTAAGAAGCTGATTGGAGCAGAAGAGGTCGTAGAAGTACCCACGACTCAGGCTAACGCCAGCAACCCACTGAAACGCTCTCGTAAACATGATATGTCCAACTCGAGGAAACGTATCACGAGTGCTGTAGTGGTAGACGGGAACCTGTGGTTAGGAAGAGAAAGTGGGGACATTGCTGTCGTGAATATCTCAGACAAGGACGATGAGGAAGAATACGGTAAAGTACTGGCAGTTCTTTCAATGGCGGATGAACCTGATCTTTTGAAGAAAGAAATGCATTTAATGACAAGAATTGCACGTGATAAAATCATCAGCTGCGCTCGCTTGGTCCGTAAGCCGAGTCTTGTGAACAAAGGACAAGTGAAGACAGTGCCCGCTACAAATAGACCGTCACCTTTTAAATTTCTTACGATGTGGAATCTTGGAGCAAACACCTCGGAAGAAGAAGATGAACCGCCGAGTGAGATGTACCAAGTTTGTATTTGGGCAAGATGGAAGAATGAAGATTTCAAACAATTCTTTAAATATCACGAAGATCTTGAAAATGCTTCCTAA

Transcript

Ppa0G366890

Protein

Ppa0G366890

MAMDKEFLNACETGNLDEVLQILYYHNDGEISLLQQDPNSLDHMHYFHALCFHGHHEIVGQLFVFDVDVNLNSQYGTPLSVACQGGHLKTVEVLIKHGATIFDPNAVETLSPIFQACKHGHRDVFIYLISEKPDIISVLGPRLLVQACHDGHLDIVVLLVSKDIDVNGASVADSPTNACISYESMLESPLHAACSQRHVEVIEYLLQEGAEVTVDLVEHYYEVLGEAVSRHQKEKEKEHESMEADFCAANFYAIHDSWFTHCSKQLVSVDLSNNYLQSIPKEIMNLPFLKEVDVSSNSLFHLPEVDDVHSSRLEVITASSNGLTHVPLSFFNLESLLHLNLANNAITSLLNIQDGECCSLEEEDAHDDVVWQCYSLKSLNLAKNELTSIPVAIHAANSLEKLQLCENKLTSFPRGWKCPLRILNLAKNELVDFQQSVFNTWIKTMDDLNLSSNELTTISWDICQLQTLQKLDLSKNKIESMPPKSHWTCTNLRRLNLANNKLRGIHYSVEVSSPVRPKRFTLARSPSSEERLCIEDDFPYEVFGETLEYLDLSNNELCAIPSSLCQFKSLEELNLSGNRSLKTLPPELGNLTECYQLGLKGLNLSSCIPKYAKSGGGVSSKDILTYLRAKQRKSVPYNRMKLMVIGLQGRGKTTLLAALCNKPLPPNISTVGIVVDEWTISGSQSFLEKMTIFPKKESLPKTNPKITFSTWDLAGQHIYYSTHQCFLSSNTLYLAVWNTSHGDEGIDKLKPWLLNVQARAPGSHVIIVGTHADLLPQKTKAKRSDELRLKIGKRYNKKGYPIIKGNYVVSCTNGENIPELREAIYKAALELKESENAGKGESLIGRKIPLSYLKLQANVIKEAETRKKENKPPILNEEQMLELAKQDPNNDIYGRHELVLAARFLHENGVILHYNDHSRGLDKLYFIEPGWLCEIMALLVTVKETNAFVKGGIIERASVNLLLKNPRLPSKFIEQYIQLMERFEVALTLDEHRLLVPSMLPRDKPGMMNEENCQSKSSDDLDKHHSREETVKKPSEYLKRLYKMNYVPSGFWSRIIARLMIAVQRWGAEEGLGDELICNEGGKAVRSSNMRPVPHGYTMFYWREGMGVFYEGGHLLVESYREKESNINNGMSEHIEGVMVTVCSTENDFSVLGFVTDQINSLISEWYPGLQECDKYGIPLVRHTIPCPTCAKRAKPFPPLRRSISSESVQSLDENKPQEFSLTECAAAAVGHHEISCPHHIDEPVKLHSLVPDLLLSDLPDELLIDSKVLLFNPVDENRLGSGGAGEVFLGSYKKQRVAIKRFYSTKESWTEMDSGIGSGLGYLGNRGGSRHTDGGSIGSRRVFKSRITNIEEELRRTRILSSFWELRQEVSVLGRLNHPCVVALVGVCVYPLCIVLELSPLGSLYSILETELKKREAARFQKDSQTSINVRKTILERDLTYKIVYQVVHALCYLHGLGIIYRDLKSDNLLVWTLDKDALVHVKLSDYGISRFATPQGTLGEEGTPGFQAPEVRTGSIYNEKVDIFSFAMVIYEVLSGFRPYYECRCSSQIKKAVRRGVRPSLKCWKESIISRPSANSILEQMQDPSFLCLKRVLPYADQKPRANITALIPLTTEDQVFSDTGSSKGSQSVLLWGGENEERCFSVIDCETGFYQVTETLCLGPRVACLAKVGERYWLGTEASAIEIFGRATPASDLKVLWSIKLKAHVLALEVEQYTNNSSNDRSAWYVGRVFACLANGTIVVISRQEFRKIYSVMTTVEVGDRESPACCLVFVKDGDELWVGCGNHVSIVDVDNLEITHKFRAYIPSRSNVRAMATDGSSVFTINRQTSYVRQWDVQTRELLYRFDFNLEDPRGQIIAQKVVPNNHLSKGGSGVSTEAEDDFPSPANLENEPEDPLNQSQSPVQNDPDDSQMLPDVPDIQRLRGYPMRQPSLMRSMRRGSSRKLSRKKLIGAEEVVEVPTTQANASNPLKRSRKHDMSNSRKRITSAVVVDGNLWLGRESGDIAVVNISDKDDEEEYGKVLAVLSMADEPDLLKKEMHLMTRIARDKIISCARLVRKPSLVNKGQVKTVPATNRPSPFKFLTMWNLGANTSEEEDEPPSEMYQVCIWARWKNEDFKQFFKYHEDLENAS

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3UHC2	Leucine-rich repeat serine/threonine-protein kinase 1 OS=Mus musculus OX=10090 GN=Lrrk1 PE=1 SV=1
Q38SD2	Leucine-rich repeat serine/threonine-protein kinase 1 OS=Homo sapiens OX=9606 GN=LRRK1 PE=1 SV=3
Q5S006	Leucine-rich repeat serine/threonine-protein kinase 2 OS=Mus musculus OX=10090 GN=Lrrk2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003012 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08477 all species →	Roc	Ras of Complex, Roc, domain of DAPkinase	Domain	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF13855 all species →	LRR_8	Leucine rich repeat	Repeat	Interproscan
PF16095 all species →	COR	C-terminal of Roc, COR, domain	Family	Interproscan
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan
PF00560 all species →	LRR_1	Leucine Rich Repeat	Repeat	Interproscan
PF13637 all species →	Ank_4	Ankyrin repeats (many copies)	Repeat	Interproscan
PF19056 all species →	WD40_2	WD40 repeated domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003591 all species →	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR051716 all species →	Family	Plant receptor-like serine/threonine kinase	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR032171 all species →	Domain	C-terminal of Roc (COR) domain	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR020859 all species →	Domain	Roc domain	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48053 all species →	LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08843	LRRK1; leucine-rich repeat kinase 1	EC:2.7.11.1	Protein kinases	ko01001	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.