Gene detail

Detailed information of Ppa0G367260 in Paragorgia papillata

Genomic Location: Contig00531:3628755...3643490
NR annotation: XP_028404851.1, E3 ubiquitin-protein ligase UHRF1-like [Dendronephthya gigantea]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G367260

ATGACCAAGTTGTATCTATGTAACCAGAATATTGCGATTAGTTTAGTTCTAGTTTCAGAACAGAAAAGTAACGTGGAACTGCAACCGCAGGTCAGAATGTGGATCCAAGTAAGAACTATGGATGGCAAAGACAGTGCTCAAATAGATAATCTTAGTAAACTGACCAAAATTGAAGAATTAAAAAAAAAACTTGAAGCTATTTTTAATATTGAACAAGAAAGGCAAAGGCTGTTTTATAGAGGAAAACAGCTTGAAGATGAACATACTTTGTTTGATTATGATGTTGGTCTGAATGATATTGTTCAGTTAATGATTCGTGTTAATATTCCTCTATTAACAACTGATGAAAATATAAACAATAATGAGAAAGAAATTGAAAAAGATGAGGAAACTGAAAAAGAAGAGACTTCAGATAATGATGTTCTCAACTCTGCTAATGATGCACCTCTCTCAAATGAAATAACAGGACTATATAAGGTTGGTGATCTTATTGATGCAAAGGATTGTGATATGGGAGCTTGGTTTGAAGCTAAAGTTGTTGCTCTCTCAATGGATAACAACACTGAGTCACCAGCAGTTCTTTACCATGTACAATATGATGGATATGAGGAAAATGAAATAAGCAAACTCTCTGAAAAAGATGTTCGCCCCAGAGCTAGTGTGATATTACAGTGGAGTCAGATTTCTGTTGGTCAAGTAGTGATGGCCAACTATAATACTGATGAAGCAAAAGAAAGAGGTTACTGGTATGATGTGGAAATAACAAGAAAGGTTGAAGCATTGACAAGAAAGAGTAAAAAGCTTTATGCTAAAGTGTTACTTACAGAAGAAAATGGAAATAGTGTTTCTCAAGAATGTGAACTTTTGTTCATTGATGAGATTTTTAAAATACCACACCATTCAGAAAATAACCAATGTACTGACAATGAAACGTCATCTGCTGTTAAACGACAAAATAAACCTGATTGTAATCATTGCAAAGATGATCCGTTGAAGAAATGTAAACATTGTGCATGTAGTGAGTGTGGAGGAAAAGAAGATCCTGAAAAACAATTGTTGTGTGATGAATGTGATCTAGCATATCATCTTCATTGTTTAAATCCAGCACTTGAAAGAATACCAGATGATGATGAATGGTATTGTCCCACTTGTAAAAATGATGCTTCTGAGGTTATCAAAGCTGGTGAGAAGCTAAGAACTAGCAAGAAAAAACAAAAAATGGCGTCCGCTAACTCACAAACCGAGAGAGACTGGGGTCGTGGCATGGCTTGTGTTGGGAGGACCAAAGTATGCACTGTAGTTCCATCAAACCACTTTGGACCTATCCCTGGTGTGCCTGTTGGGTCCTCGTGGATGTTCAGAATAGGCGCAAGCGAGGCAGGAGTTCATCGACCTCATGTTAGTGGCATTCATGGCCGTGAAGATGAAGGCGCTTTTTCTATTGTTCTTGCTGGCGGATATGAAGATGATCTGGACAATGGGGATGAGTTTTTTTATACTGGAAGTGGTGGAAGAGATTTATCTGGTAACAAACGCACAGCAGAACAAGCTCTTGCTAAAAACTGTGCTGCTCCATTGGACGAGAAGAGCAGAGTAAAAGCTAATAACTGGCAAGATGGCAAACCCGTCCGAGTGATTCGTAGTAGCAAGTTTAAGAAGCATTCCAAGTTTGCTCCAGATAATGGCAACAGATACGATGGAATATACAAGGTGGCAGAATACTGGCCTGAGAAGGGGCAATCTGGTTTTATTGTACGAAGATACTTGCTTCGACGGGATGATAAGGAGCCTGCACCGTGGACATCAGAAGGAGAGCAAAGAATTCAAGAGCTTGGTTTAGTGATGCAATACCCCGAAGGATATTTGGAGGCACAAGAAACCAAACGTTTGGACAAAGAAAAACAAAAACGAGAAGGGAGAGCCGACACAATTTCTAAAGGAAAACGTAAAAGAAGTGAGTCTCCGTCTAACTCGTCGTCACCCTCCCAGCTGTCGCCAGCAAAGAAAAAAGTTTATTCTGTAGCCAAAGAAAAGCTAGATCTCATTCACGAAGATGCTCAAAATAAGAAAATCTGGAATGAAATCTTATCATGCAATGAAAATTTTACGGAGTTCCATAAGAAAGTCGAAGAAGCGTTTCTTTGTATTTGCTGTCAAGAAATAGTTTCGAAACCAGTCACAATGGAATGCAAACATAATGCATGCAAGGTTTGCCTCACTCGCTCGTTTAAGGCAGGTGTGTTTGCTTGCCCAACGTGCCGACATGACCTTGGTAAGGATGCTAAACTATTCATCAATTCTTCACTTAACTCAGCTTTGAAAAATATCTTTCCTGGTTATGATAAAGGACGGTGA

Transcript

Ppa0G367260

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B6CHA3	E3 ubiquitin-protein ligase UHRF1 OS=Xenopus laevis OX=8355 GN=uhrf1 PE=2 SV=1
F6UA42	E3 ubiquitin-protein ligase UHRF1 OS=Xenopus tropicalis OX=8364 GN=uhrf1 PE=3 SV=2
E7EZF3	E3 ubiquitin-protein ligase UHRF1 OS=Danio rerio OX=7955 GN=uhrf1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001761 (this species only)
Ubiquitin family	ULD\|UBL\|NEDD8 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 activity RING\|PHD · all ubiquitin genes in this species
Ubiquitin family	ULD\|UFD/UBQ\|UBQ_Other · all ubiquitin genes in this species
Ubiquitin family	ULD\|UFD/UBQ\|UBQ_PIM · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02182 all species →	SAD_SRA	SAD/SRA domain	Domain	Interproscan
PF12148 all species →	TTD	Tandem tudor domain within UHRF1	Domain	Interproscan
PF00240 all species →	ubiquitin	Ubiquitin family	Domain	Interproscan
PF00628 all species →	PHD	PHD-finger	Domain	Interproscan
PF00097 all species →	zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003105 all species →	Domain	SRA-YDG	Interproscan
IPR019787 all species →	Domain	Zinc finger, PHD-finger	Interproscan
IPR045134 all species →	Family	UHRF1/2-like	Interproscan
IPR036987 all species →	Homologous_superfamily	SRA-YDG superfamily	Interproscan
IPR021991 all species →	Domain	UHRF1, tandem tudor domain	Interproscan
IPR015947 all species →	Homologous_superfamily	PUA-like superfamily	Interproscan
IPR000626 all species →	Domain	Ubiquitin-like domain	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR018957 all species →	Domain	Zinc finger, C3HC4 RING-type	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001965 all species →	Domain	Zinc finger, PHD-type	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14140 all species →	E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0010216 all species →	Biological Process	obsolete negative regulation of gene expression via chromosomal DNA cytosine methylation	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10638	UHRF1, NP95; E3 ubiquitin-protein ligase UHRF1	EC:2.3.2.27	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.