Gene detail

Detailed information of Ppa0G367630 in Paragorgia papillata

Genomic Location: Contig00533:127004...148001
NR annotation: CAB3998577.1, histone-lysine N-methyltransferase SETD2 isoform X2 [Paramuricea clavata]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G367630

ATGTCCACCGAAATGGAGGTGAATGGAAGTCCTGAAACAAAGGAAAGCGAGTCTCAGGGTACCAAGAACGACCACGAGAAAAGTGAAACAGATACAGATAGTGAATCAGAAGATCAGATTGAATATAGCAATGTTGCATCTTCAACTACCAATGAAAGCTACCCAACATTTGATATCCTTGAGGACAATATTTATCTTGGCAATAAGAAGAAAAGAGTAAATAAAGAAATCCGACGCATGTCATGTGACTGCCCTTATAGCCCAGAAGAACATGATTTTGTTGGTTGTGGAGATGATTGCTTGAATCGACTTCTGATGATTGAATGCAACAACCGATGTCCATGTGGAGAATCTTGTTCAAATCGAAAATTTCAAGAGGGGCAGAAAATACAAGTTGAAGCATTTAGAACTGATAAAAAGGGATGGGGTTTGAGAACTTTGGAAGATGTTGCAGCAAATCAGTTTGTCATAGAGTATTGTGGTGAGGTCATGGGTTATGAAGAATTTGAAAACCGAGTTGAAATGTATGATGATGAACACCGAAGGCATTACTATTTCATGACACTAAGAGCAGATGAGATTATTGATGCTACTCATAAGGGAAACTTGTCAAGATTTATTAATCACAGTTGCAGCCCAAACTGTGAGACACAAAAGTGGACTGTCAATGGGTATCTGCGAATTGGGTTCTTCTCCATAAAGGATATCAAAGCGGGAACTGAGCTGACATTTGATTATAAATTTCAGCGTTATGGGAAGAAAGCCCAAATTTGCTACTGTGATTCATTAAATTGCCGTGGAATTATCGGAGGAGAGAAACACACACCGCTCAAGTCGATTATCTCAAGTCGACCTGCCTCTCCAGCGCCTACAAGCTCTCCGAGACGAAATCGAAGACGACGGCTGGCGGAACAGTTCGACGATAAACCACTTGAAATCGAGATAGCTCAGTTGCTTGGAAGTGAAAAGGGCATTAAAAGTGATGACCAAGCTTTGAAACTCTCGCAGTTTATGGTTCGAGCAGAAACACAGTCACAACGATTGCTTTTATTGGATACGCTTTGGTCTACTGAAGACCCAAATTCTTTACGAAGTATTCTGCGGTATCAAGGGTTGTCTCTTCTCTGGAGCTGGATGGTTGATCTTGGAGACAATTCTCTTCGCTTTCAGAAAAAGATCGTGCAAGTCTTAAAACATCTTCCCGTTGCCAATCTGAATCAAGTGAAGGACACCAAGGTACTCAAAGTGATTAACAAATGGGCTAAAAAACCATCGGTCTCGTGTGTTCCCGAAGAGGAAACGAGTTCAAGCGATGTAGACTCCCGAGGACTTAGCCCACTGGAAATACCAGATGACACAGGCAAACGAGACGGCGACATAAGTTCTAGCTCTACCGAGATCGGGTTTGATGACTTACAAAGCGCTTCTAAACCCAAGAACATGGAAACCCAGCCTATAGCTGACGATTCTCAAGATACAACCAAAGCGAAAACTTTAAATGAAAACCCAGAAACACCAACAGAAGGTGAAGGGGAAGCTGGAGTAACAGAGAAGTCGGAAACACAGAAACCCGACGAAGATAAAGACGAGGACAATGTATTTGAGGAAGCAGACGAAGCGAAAACAGCTACGGTGAAGCTTGCTTCGGGAGAAAACCAAACTGTTTGTGATATGCCGGTCGTTGCACCAGGGATCGGAGAATCGTCGGAGGAGGAGTCCAGGTGGTCGGAAGACGATTCGACGTCGACCGATGGCGAAAATATTAAGGATCTAGCAGCTGATTTGTTGGACAGCTGGAGAAATCTGAAGGAAGTTTACAGAATTCCAAAAAAGTCTACCATTGTAGTAAAACGCGAGCCTGAATCAACGTCTGGAGCCGTCGAAGCTAAAACGAAACATAATATTAAGCATGCGCTCAAGCTTCCTCATATTCCAACTATAGAAGGTGATCTTTTCCAGAAAGACGAGTTCCTCTCGAAGCTGGGGGAGCTCGATCGCAAGCCATTCCAACAAGAGTCATCTGAGCTCCCGTCTCTGATGAGTAGTACATTACCTGCACCCGATCCGGAAGACACCGCCCACGAGGCAAGCAAGCTTCCTATTCATCAGCGCTTACAGATGGTAGCTAGTGGCGCGAAAACCCCGAAGCAGTATCCGGTTTGGCAGGAGAAAGGCGGTAAGAGGGCCCGCAAACACCCTTACCTGCACGCAGGCGCAGGCGGAGCTGGTGCGTTTCCATCGGGCGCTGAGAAGTGGGCGCCTCGGCACCAGGTCGCTGGGAAATCTCGCTTTACTCAACCCGGTGGTGTTCCTCCAAATCATCCGACGCATGCCGGCGGGCAACTCAGGCCAAATATGGGCAACGCTCAGTGGCAGGCTCAGGATTCGTCAGCTTATCCTGGAGGTTTTCAATACCCGCCAGGCGGTGGACCTGCCGGCTACCCAACGCCTAATCCGAATCAGGCTGCTGCGCAGGTTGCGGCTATGCAGTCATCGTACTTCACGCCATCTGGACCACAGCATGGTCAAGCTGCTGACCACGCTCTTTATCAACAAGCGTATCCAAATACAACGGAGCAATCATCTTTTGGACCTGGACCGAGCCAGTTGCCTGCTCAAGGTGGAATCCAGACCAACCCCCTCGGATACCAACAAATGCAGCAAGCAGTCAACCAACCAGTCTACCAGATGCCGTTATTCGACCCGAGTAAGCCTCCTCCGAACTTTGGTCCTGCCCAGACTAACATCCCTTCTCAACAATTTCCCAATGTCGCTCAGTTTCCAAACCCCTCGTCTCAGTTCTCGAACTCTCCTCCAGGCTATTCAACAACACCTCAGGTTCCTGGTTATCCCATGCAGCCACCTCAGGCGCAGCAGGTTTCAGAACAAGTCATGTCGCAAACGTCGCTGCCTTCAGTTGTGGAGCATTCCCAGGCGATGGGACATCAGTATCCGTCAAACGCGGTGTCGACCACGTCTATGGTGAGCTCAACTGTGAATGAAACTGAGACATCAAAGACTGACGTGGGTAGTAGGTCTGAAGGTTGGCCGATCGAGTCATTTAACAAACCACAAGATGCACCACTGCCATCCGATTGGAAGAAAGCTTATGATGGAGAAGGCCGTGCTTACTACTATCACGTGGTTACAAGACAAACGCAGTGGGAACCACCAGCCGCCGACCGAAGTCCACCAACACCAGAGCTTGGTTACCTTGGCGACGAACTAGATTCTAGTATGGAAATGACCACCACGTTTCCCTCACATATTACAACAGACGTTGTAATGGAAGTGGTTGATCCTAATAAAAGGAAGAAACCCAAGACGCCGTCAACTCCCCCCGGTTCACCGCCAAAGAGTCCAATGGGCAAGTACACGACTGCGGCGGCTGATACAACTGACGTCAGAAAAGGATTGTACTCTCCTTCCTTGTTGCTGCAAGGACGTCATCTTACGCCAGAACAGCGAAAACTGAGAGAGACATTTAGAATGAAGCTCTCGGCCGTTGTTGTCAACTACCTCAACCCGTACCATAAACTCGACTGTAAAGTAGGCAGGATATCAACAGTAGATGATTTTAAATTTTTAGCCCGTAAGTTAACCCACGGAGTAATGGTAAAAGAGCTTGCTCGACTGAAGGACGAAAGTCAATTGGCGTGCAACGACTCCGTGAAAATCAAAACCAAAGAGTACATTCGACATTACATGCAGAAATTCGGACTCGTGTACAAAGCGTCGTGA

Transcript

Ppa0G367630

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9BYW2	Histone-lysine N-methyltransferase SETD2 OS=Homo sapiens OX=9606 GN=SETD2 PE=1 SV=3
E9Q5F9	Histone-lysine N-methyltransferase SETD2 OS=Mus musculus OX=10090 GN=Setd2 PE=1 SV=1
Q9VYD1	Histone-lysine N-methyltransferase Set2 OS=Drosophila melanogaster OX=7227 GN=Set2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004034 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00856 all species →	SET	SET domain	Family	Interproscan
PF17907 all species →	AWS	AWS domain	Domain	Interproscan
PF08236 all species →	SRI	SRI (Set2 Rpb1 interacting) domain	Domain	Interproscan
PF00397 all species →	WW	WW domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042294 all species →	Family	Histone-lysine N-methyltransferase SETD2, animal	Interproscan
IPR006560 all species →	Domain	AWS domain	Interproscan
IPR001214 all species →	Domain	SET domain	Interproscan
IPR001202 all species →	Domain	WW domain	Interproscan
IPR003616 all species →	Domain	Post-SET domain	Interproscan
IPR013257 all species →	Domain	Set2 Rpb1 interacting domain	Interproscan
IPR046341 all species →	Homologous_superfamily	SET domain superfamily	Interproscan
IPR038190 all species →	Homologous_superfamily	Set2 Rpb1 interacting domain superfamily	Interproscan
IPR036020 all species →	Homologous_superfamily	WW domain superfamily	Interproscan
IPR044437 all species →	Domain	SETD2/Set2, SET domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46711 all species →	HISTONE-LYSINE N-METHYLTRANSFERASE SETD2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005694 all species →	Cellular Component	chromosome	Interproscan
GO:0010468 all species →	Biological Process	regulation of gene expression	Interproscan
GO:0016279 all species →	Molecular Function	protein-lysine N-methyltransferase activity	Interproscan
GO:0046975 all species →	Molecular Function	histone H3K36 methyltransferase activity	Interproscan
GO:0097198 all species →	Biological Process	obsolete histone H3-K36 trimethylation	Interproscan
GO:0042054 all species →	Molecular Function	histone methyltransferase activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11423	SETD2; [histone H3]-lysine36 N-trimethyltransferase	EC:2.1.1.359	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.