Gene detail

Detailed information of Ppa0G367830 in Paragorgia papillata

Genomic Location: Contig00533:419082...420749
NR annotation: CAB3978254.1, homeobox Nkx- [Paramuricea clavata]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
Q90481	Homeobox protein Nkx-2.2a OS=Danio rerio OX=7955 GN=nkx2.2a PE=2 SV=1
P97273	Thyroid transcription factor 1 (Fragment) OS=Cavia porcellus OX=10141 GN=TITF1 PE=2 SV=1
Q9NLC2	Homeobox protein ceh-24 OS=Caenorhabditis elegans OX=6239 GN=ceh-24 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046	Homeodomain	Homeodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356	Domain	Homeobox domain	Interproscan
IPR050394	Family	Homeobox NK-like transcription regulators	Interproscan
IPR020479	Domain	Homeobox domain, metazoa	Interproscan
IPR017970	Conserved_site	Homeobox, conserved site	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24340	HOMEOBOX PROTEIN NKX	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0030154	Biological Process	cell differentiation	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan