Detailed information of Ppa0G369200 in Paragorgia papillata

Genomic Location: Contig00533:2298941...2319762
NR annotation: XP_028408998.1, LOW QUALITY PROTEIN: collagen alpha-1(XVIII) chain-like [Dendronephthya gigantea]
Species Paragorgia papillata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P39059Collagen alpha-1(XV) chain OS=Homo sapiens OX=9606 GN=COL15A1 PE=1 SV=2
O35206Collagen alpha-1(XV) chain OS=Mus musculus OX=10090 GN=Col15a1 PE=1 SV=2
P39061Collagen alpha-1(XVIII) chain OS=Mus musculus OX=10090 GN=Col18a1 PE=1 SV=4
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002240 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF06482
all species →		EndostatinCollagenase NC10 and EndostatinDomainInterproscan
PF20010
all species →		Collagen_trimerCollagen trimerization domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR048287
all species →		DomainThrombospondin-like, N-terminal domainInterproscan
IPR016186
all species →		Homologous_superfamilyC-type lectin-like/link domain superfamilyInterproscan
IPR016187
all species →		Homologous_superfamilyC-type lectin foldInterproscan
IPR050149
all species →		FamilyCollagen superfamilyInterproscan
IPR010515
all species →		DomainCollagenase NC10/endostatinInterproscan
IPR013320
all species →		Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR045463
all species →		DomainCollagen type XV/XVIII, trimerization domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24023
all species →		COLLAGEN ALPHAInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005615
all species →		Cellular Componentextracellular spaceInterproscan
GO:0030020
all species →		Molecular Functionextracellular matrix structural constituent conferring tensile strengthInterproscan
GO:0030198
all species →		Biological Processextracellular matrix organizationInterproscan
GO:0031012
all species →		Cellular Componentextracellular matrixInterproscan
GO:0062023
all species →		Cellular Componentcollagen-containing extracellular matrixInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for Ppa0G369200.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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