Gene detail

Detailed information of Ppa0G370050 in Paragorgia papillata

Genomic Location: Contig00533:3012755...3016425
NR annotation: XP_046859600.1, protein transport protein Sec61 subunit beta-like [Xenia sp. Carnegie-2017]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P60467	Protein transport protein Sec61 subunit beta OS=Canis lupus familiaris OX=9615 GN=SEC61B PE=1 SV=2
P60468	Protein transport protein Sec61 subunit beta OS=Homo sapiens OX=9606 GN=SEC61B PE=1 SV=2
Q5RB31	Protein transport protein Sec61 subunit beta OS=Pongo abelii OX=9601 GN=SEC61B PE=3 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010503 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03911 all species →	Sec61_beta	Sec61beta family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR030671 all species →	Family	Protein transport Sec61-beta/Sbh	Interproscan
IPR016482 all species →	Family	Protein transport protein SecG/Sec61-beta/Sbh	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13509 all species →	SEC61 SUBUNIT BETA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005784 all species →	Cellular Component	Sec61 translocon complex	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0005086 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0006616 all species →	Biological Process	SRP-dependent cotranslational protein targeting to membrane, translocation	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0031204 all species →	Biological Process	post-translational protein targeting to membrane, translocation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09481	SEC61B, SBH2; protein transport protein SEC61 subunit beta	-	Secretion system	ko02044	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.