Gene detail

Detailed information of Ppa0G375020 in Paragorgia papillata

Genomic Location: Contig00544:3364076...3390359
NR annotation: XP_028410190.1, ranBP-type and C3HC4-type zinc finger-containing protein 1-like [Dendronephthya gigantea]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G375020

ATGGCCCAAGCACTCAATCCTGCTCGGGTGACCGGCACAGCAACACAGGCATCAACAGGTCCAGCCCAAGTTCTTCTCGCCTCGTGTAAAGCAACGTTGTACGTTTTGAGGAACCAACAATGGGAAGCCCTATTCGATTCAAGTGTTTTTAGAGTACAGTTGTTACGGCTCGGACCGGGAAGCTTTGTTTTGTTGGCCGTGGACGAACAAACATTAGTGGTCAAAGTAAAAATATCTCTTCGCTTCAACACAGTGTTTAAAGTGATCAAGAATAATTTCTTCAGTTTACTGGATAATGGTGTAACTGTTTGGGCTTTTGATATCACTGGTCAACCAATGGATGCGCAAACATTCGCAATTGTAATTCAGAATTCGTTGGCATCACTGAAAGAGTTACATATAAACAAGACCAACAGACCTACACTCCCTACAGCCACACAACCAACGCAACCGACCTTACCAAGGCAGGAGATGAAGGGTGATCAACAGATTTACTTAAACAATATCTGTTTGACCCTCAGTGATGCCATCAACAGAGGCAACGAACAATTCGCAAGCGACCTTGCTCGCCAGTTAGCGTCGCATAAAGCGTTGGTTCGGATAAAATTAGATGACCCTGAAAAAGAGGAACTAGCAAAAGCGACAAAAGACAACAAATTAAATCTTAAGGTGCAAGTGGAGGATAAAGAATCTACTGGCTGTCATTTCAGACTCAACATTGCTCCACAAACCACGATCAACCAGCTGAAACAAATGGTCCAGACCAAATACGAGTTTCCAGCAGAAATTCAACGTTGGATAATAGGCAAACGTTTACCCAAGCCGTCCGAAAGCCTTTTAGATTGTGGCATCAAAACTTCAGGGAGCACACTTTTCCTATATTTAATATCGGATAAGGCTGCAGCAGGCGCCGAAGCACCTCCCGAAAGCCGAATAGGAGACGAGAGACGCGCACCAATGTTAAATAGAATAAATGAACCCAATTTGGCTAATGTTCCCGCCCTCATACAACAAGGTCAGCGGGAACTCCAGTACGATCAGGTGCAAGATGTGTACGGCATAGCCCGAAATATGTTACAGAGCATGCCGAACATCCCCTCGGTTCGTATTCGTCAACCAGTCGCCGAAGCTCCGGAGGATCTCGTGGGATGGGTGTGTTCGCAATGTACTTTCCGTAATTCGCCCACCAGACCGGGATGCGAAATGTGCTCCGCTAATCGACCGGCGGATTACCAAGTCCCCGAGGATTATATGCCCAATCAAAGAGAGCGAGAGAGACTGCAATTTGAACGTTCTGGTGAAATGTTAATGCGAGAGGAAGACGAAAGGAAGAAACGACGCGAGATGGAAGAGAGAGATAGAAACTTCCAGAGATTATTGTCAATCGTAGACCAACCTTTAATTGAGAGCCAAGAGGACTTTCAGTGTCCTATCTGCTTTGATGACGTAGAAGCCGGCGAAGGAGTGGTCTTAAGAGAATGCCTACACAACTTTTGCAGGGATTGTCTTACTGAGCACATTCGTGCGTCGACAGAACCTGAAGTTCAGTGCCCGTTTGATAATGGAGATTTTGCTTGTCACGACATTATTACACCACAGGAAATACAGGAGCTTTTGACTCCAGAAGACTTCCAAAAGTATTTACAACGCAGCTTGGTGACTGCCGAAAGTCGAGCTCCGAACAGTTTTCACTGCCAAACACCGAACTGTCACGGATGGTGTATCTACGACGACGAGGTAAACGAGTTTGACTGTCCAGTGTGCAACAAAAAGAACTGTTTGACGTGTAAAGCGATTCACCATCCCACAAACTGCAAGGAGTATCAAGATGATTTGAAAAGAAATGCAGCGAACGACGAAGCCGCTCGCAAGACTCAAGAATATCTTGAGGAGATGCTTAGGACAAAAGACGGCATGAATTGCCCTTGTTGTGGAATTATTCTTGTCAAAAAGGATGGTTGTGATTGGATGAAATGCAGCATGTGTAAGACTGAAATATGCTGGGCTGTTCGTGGCCTGAGATGGGGGCCTGGGGGTCCTGGTGACACCAATGGGGGATGCAAATGTCGAATAAATAACGCAAAATGTCACCCTGATTGTCGAAATTGTCACTGA

Transcript

Ppa0G375020

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q62921	RanBP-type and C3HC4-type zinc finger-containing protein 1 OS=Rattus norvegicus OX=10116 GN=Rbck1 PE=1 SV=3
E6ZIJ1	RanBP-type and C3HC4-type zinc finger-containing protein 1 OS=Dicentrarchus labrax OX=13489 GN=rbck1 PE=3 SV=1
A9JTG5	RanBP-type and C3HC4-type zinc finger-containing protein 1 OS=Danio rerio OX=7955 GN=rbck1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003398 (this species only)
Ubiquitin family	UBD\|ZnF\|NZF · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 activity RING\|RING · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 activity\|RBR · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01485 all species →	IBR	IBR domain, a half RING-finger domain	Domain	Interproscan
PF00240 all species →	ubiquitin	Ubiquitin family	Domain	Interproscan
PF13639 all species →	zf-RING_2	Ring finger domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR002867 all species →	Domain	IBR domain	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR000626 all species →	Domain	Ubiquitin-like domain	Interproscan
IPR047558 all species →	Domain	Heme-oxidized IRP2 ubiquitin ligase 1, BRcat domain	Interproscan
IPR001876 all species →	Domain	Zinc finger, RanBP2-type	Interproscan
IPR047559 all species →	Domain	Heme-oxidized IRP2 ubiquitin ligase 1, modified RING finger, HC subclass	Interproscan
IPR047557 all species →	Domain	Heme-oxidized IRP2 ubiquitin ligase 1, Rcat domain	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR051628 all species →	Family	Linear Ubiquitination-Associated E3 Ligases	Interproscan
IPR036443 all species →	Homologous_superfamily	Zinc finger, RanBP2-type superfamily	Interproscan
IPR044066 all species →	Domain	TRIAD supradomain	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22770 all species →	UBIQUITIN CONJUGATING ENZYME 7 INTERACTING PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000151 all species →	Cellular Component	ubiquitin ligase complex	Interproscan
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0043130 all species →	Molecular Function	ubiquitin binding	Interproscan
GO:0043161 all species →	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0097039 all species →	Biological Process	protein linear polyubiquitination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10630	RBCK1, HOIL1; RanBP-type and C3HC4-type zinc finger-containing protein 1	EC:2.3.2.31	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.