Genomic Location: Contig00544:3407055...3412498
NR annotation: CAB4025024.1, ranBP-type and C3HC4-type zinc finger-containing 1-like [Paramuricea clavata]
Species Paragorgia papillata · all data for this species · gene families
| CDS |
| Ppa0G375040 |
| Transcript |
| Ppa0G375040 |
| Protein |
| Ppa0G375040 |
| UniProt accession | Description |
|---|---|
| Q9WUB0 | RanBP-type and C3HC4-type zinc finger-containing protein 1 OS=Mus musculus OX=10090 GN=Rbck1 PE=1 SV=2 |
| Q62921 | RanBP-type and C3HC4-type zinc finger-containing protein 1 OS=Rattus norvegicus OX=10116 GN=Rbck1 PE=1 SV=3 |
| Q9BYM8 | RanBP-type and C3HC4-type zinc finger-containing protein 1 OS=Homo sapiens OX=9606 GN=RBCK1 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003398 (this species only) |
| Ubiquitin family | E3|E3 activity RING|RING · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01485 all species → | IBR | IBR domain, a half RING-finger domain | Domain | Interproscan |
| PF00097 all species → | zf-C3HC4 | Zinc finger, C3HC4 type (RING finger) | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR002867 all species → | Domain | IBR domain | Interproscan |
| IPR018957 all species → | Domain | Zinc finger, C3HC4 RING-type | Interproscan |
| IPR047559 all species → | Domain | Heme-oxidized IRP2 ubiquitin ligase 1, modified RING finger, HC subclass | Interproscan |
| IPR017907 all species → | Conserved_site | Zinc finger, RING-type, conserved site | Interproscan |
| IPR047558 all species → | Domain | Heme-oxidized IRP2 ubiquitin ligase 1, BRcat domain | Interproscan |
| IPR001841 all species → | Domain | Zinc finger, RING-type | Interproscan |
| IPR044066 all species → | Domain | TRIAD supradomain | Interproscan |
| IPR013083 all species → | Homologous_superfamily | Zinc finger, RING/FYVE/PHD-type | Interproscan |
| IPR051628 all species → | Family | Linear Ubiquitination-Associated E3 Ligases | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR22770 all species → | UBIQUITIN CONJUGATING ENZYME 7 INTERACTING PROTEIN-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0008270 all species → | Molecular Function | zinc ion binding | Interproscan |
| GO:0046872 all species → | Molecular Function | metal ion binding | Interproscan |
| GO:0000151 all species → | Cellular Component | ubiquitin ligase complex | Interproscan |
| GO:0004842 all species → | Molecular Function | ubiquitin-protein transferase activity | Interproscan |
| GO:0043130 all species → | Molecular Function | ubiquitin binding | Interproscan |
| GO:0043161 all species → | Biological Process | proteasome-mediated ubiquitin-dependent protein catabolic process | Interproscan |
| GO:0097039 all species → | Biological Process | protein linear polyubiquitination | Interproscan |
Ppa0G375040.
