Gene detail

Detailed information of Ppa0G383880 in Paragorgia papillata

Genomic Location: Contig00561:2239903...2258409
NR annotation: CAB3985039.1, HEAT repeat-containing 1 [Paramuricea clavata]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G383880

ATGTCGTCTTTGCAGAGTCAGTTGAAGAGACTTCGAATTCCCGACAATACCTCTTTGGAAAGAGCTACTAAATACAAGAAAAGAACGTCATTTCTCTTTGACCCAAAGGAAGCTACTGATATTGACAATGAAACTGTGTTTGCCTTGGCTTTGAACGGTCTCGACGAACTAAAACTTGTGAATGTACACTTCGAAAATTTTGAAGCCTCACTCTTCAACGAGTCTTCAAAGCTTCTAGACCGCAGTCTACAAACCCAAGAGGTTAACGACAAGTTCGATAATGAGATAAAAGAATACCTACAGTTCTTATCGCCGTATATTCTGCTAAAACCCGCTCACAAAACATTGGAATGGTTGATTCGTCGGTTTCAGATCCATCTGTATAATGTGGATGATTTATTAGCATGTGTCTTTCCCTACCATCAGTCCAACGTCTTTGCTCGTGTTATACAGTTGTTAAATATTGAAAATACGAAGTGGTCGTGGCTAGATCGAGTAAAGAAGACAGGGAGTCCCTTACCTCGAAGCACAATCATTCAACATTGTGTTTCCAATCCAGGATTTTTCTCTTTTATTTCTGGTTTGGTTTTCAGTGTTGTCAAAACAAAGGCTGGTCAGAATATTGCTGCCCTTCATGTATTTTCATCATTCTATGTATCAACTATCATTGGAGTGCTCGAGAGTCTGGATAAGGTATCAGAGGAAATTGTTAGTTCTTTACTCGCTCACATAATTCATGGACTGAAGTCTCATGTGAGTGATCTACAAGCAGCTTCATACATGATTATTGGTCAGTTGTCAACAAAATGCACATTGGAGTCTTCTGTTGTTGAATCGCTTCTCAAAACAATGTGTAAGTATGCGACTGTCGAGCTTTCAGAATCACTGTTGATGTGTATCAATTGTTTATGTTCAACTTATAATCTCACAAAATTTCCAAAAAGAGCTTTTCATTCATTATGTAAACTACCCAACTTGGCAACGCTTCTCTGTGAGTTGTCCAGGAATTATCAAATGGACTCATTTCTCAAAGTCTTTGTATCGCATCTCATTAAAGTTGTACTAAGCTCTATTGTTGATGACAAACAAAATGACGAAGAAAGGCAATTATTAGAGTCTTCCTTGTTGTTGGACTTGTTAAGAGATATGGATGTGGATGATACACTGAAGATGGACTTTGCCAGAAACCTGCTACATGAATATATTGCGACAAGAAGAGCATGTGGCAGTGAAAGTGGTGTTGTGATCAATAATTGTGTGAGAAGTCTTGTCAGGATCATTCAAAATAGGTGGCAACCTCAGATGGACAAAACTATTCAGGATTACCTTGTCAGTTTACGAAATGAAGACAGTTCTGAACAGGAGAGCCAGCAAGCGATCCAGTGGACACAAGAGTTTGTGGCTATGGCATTGTCCAATGTTGGAAGTCAGATTGTATGTGATTCTGGATCCACGTTAATCATAGCATTACATCACCCTGAAGCTGAATTTCGGAAATTGGCCTTGAAAAGAGTTTCGAGCATTTTGAAAGAGCCTGTGCAAAGCCATGAAGATAAAGAATTTTTGAAGGAATCACTTTTAGTAAAGCTGGGTGATGAAGATTGTGATGTAGTCTTGACTGTTTTAAAGTTAAACGAGGGCCTAGTCAACATTTGTCATGGTGAACAGTTGGTAGCCTCGTTGATAAAGTTGATGGAAAAGAGATCAAGTGAATGGACGAACGTTTTTGAGCACGCTTTGGGTATTTTACTTAGTGATGGGTTGTTGGAAAAAATTCCAAATCTGCACGAGCATGTTTTGTTCCACGTTATGCCTTTGATGTTTTTAACAAGAAAGAATGTTGACCGTGCCAAGCTTATTTTTGAGCACTTGAGTAAATCTCAATTAAAATCAGAATGGCTGGCAAAGAGTTTGCAGAAAAAGACCTTGAGAAAGAGATTTGAGAAATGCTCAAAAGACTCGACGTCCCAAGAACTTGCAGTTGCAAATGACGTGCTTATCTGCACTCTAGCAGAAAACATCGCTTTGCTGGAAAATGAGTCAGCTTTAGAAACGATTAAAATGATGCAAGAACATGCGAATAAAGGGCATGACCAGAGATTTGTTGTCATGTTTCTAATGATCTCCGGGCATTTGTTGAGCATCGTTACGGAGGACACACAGAAGTTTAAGGTCATGTCACTTTTTCTTCGTGGACTGCTCTTATTGGTTAGCCGAGTTGCCGAGGGCCAAGGAAATTCTAAACTACTTCAGGTTTGA

Transcript

Ppa0G383880

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9H583	HEAT repeat-containing protein 1 OS=Homo sapiens OX=9606 GN=HEATR1 PE=1 SV=3
Q7SY48	HEAT repeat-containing protein 1 OS=Danio rerio OX=7955 GN=heatr1 PE=2 SV=1
Q9C8Z4	Uncharacterized protein At3g06530 OS=Arabidopsis thaliana OX=3702 GN=At3g06530 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002638 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12397 all species →	U3snoRNP10	U3 small nucleolar RNA-associated protein 10	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR040191 all species →	Family	U3 small nucleolar RNA-associated protein 10	Interproscan
IPR022125 all species →	Domain	U3 small nucleolar RNA-associated protein 10, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13457 all species →	BAP28	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000462 all species →	Biological Process	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0030515 all species →	Molecular Function	snoRNA binding	Interproscan
GO:0030686 all species →	Cellular Component	90S preribosome	Interproscan
GO:0032040 all species →	Cellular Component	small-subunit processome	Interproscan
GO:0034455 all species →	Cellular Component	t-UTP complex	Interproscan
GO:0045943 all species →	Biological Process	positive regulation of transcription by RNA polymerase I	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Ppa0G383880.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.