Gene detail

Detailed information of Ppa0G386260 in Paragorgia papillata

Genomic Location: Contig00562:3677215...3677750
NR annotation: CAB4043534.1, General transcription factor IIH subunit 5 [Paramuricea clavata]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5ZKH0	General transcription factor IIH subunit 5 OS=Gallus gallus OX=9031 GN=GTF2H5 PE=3 SV=1
Q2T9Z5	General transcription factor IIH subunit 5 OS=Bos taurus OX=9913 GN=GTF2H5 PE=3 SV=1
Q6ZYL4	General transcription factor IIH subunit 5 OS=Homo sapiens OX=9606 GN=GTF2H5 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0011507 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06331 all species →	Tfb5	Transcription factor TFIIH complex subunit Tfb5	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035935 all species →	Homologous_superfamily	TFB5-like superfamily	Interproscan
IPR009400 all species →	Family	TFIIH subunit TTDA/Tfb5	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR28580 all species →	GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000439 all species →	Cellular Component	transcription factor TFIIH core complex	Interproscan
GO:0005675 all species →	Cellular Component	transcription factor TFIIH holo complex	Interproscan
GO:0006289 all species →	Biological Process	nucleotide-excision repair	Interproscan
GO:0006294 all species →	Biological Process	nucleotide-excision repair, preincision complex assembly	Interproscan
GO:0006366 all species →	Biological Process	transcription by RNA polymerase II	Interproscan
GO:0006367 all species →	Biological Process	transcription initiation at RNA polymerase II promoter	Interproscan
GO:0070816 all species →	Biological Process	obsolete phosphorylation of RNA polymerase II C-terminal domain	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Ppa0G386260.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.