Detailed information of Ppa0G390640 in Paragorgia papillata

Genomic Location: Contig00567:268197...272850
NR annotation: CAB3991283.1, ribonuclease III [Paramuricea clavata]
Species abbreviation PPAPI · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q5R106Ribonuclease 3 OS=Idiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR) OX=283942 GN=rnc PE=3 SV=1
O51648Ribonuclease 3 OS=Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31) OX=224326 GN=rnc PE=3 SV=2
Q0K8N3Ribonuclease 3 OS=Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337) OX=381666 GN=rnc PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0007379 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF14622
all species →		Ribonucleas_3_3Ribonuclease-III-likeFamilyInterproscan
PF00595
all species →		PDZPDZ domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000999
all species →		DomainRibonuclease III domainInterproscan
IPR001478
all species →		DomainPDZ domainInterproscan
IPR051109
all species →		FamilyMembrane-associated multiprotein complex regulatorInterproscan
IPR036034
all species →		Homologous_superfamilyPDZ superfamilyInterproscan
IPR036389
all species →		Homologous_superfamilyRibonuclease III, endonuclease domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR14063
all species →		PROTEIN LIN-7 HOMOLOGInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004525
all species →		Molecular Functionribonuclease III activityInterproscan
GO:0006396
all species →		Biological ProcessRNA processingInterproscan
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0005911
all species →		Cellular Componentcell-cell junctionInterproscan
GO:0007269
all species →		Biological Processneurotransmitter secretionInterproscan
GO:0016323
all species →		Cellular Componentbasolateral plasma membraneInterproscan
GO:0045199
all species →		Biological Processmaintenance of epithelial cell apical/basal polarityInterproscan
GO:0045202
all species →		Cellular ComponentsynapseInterproscan
GO:1903361
all species →		Biological Processprotein localization to basolateral plasma membraneInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for Ppa0G390640.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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