Gene detail

Detailed information of Ppa0G391510 in Paragorgia papillata

Genomic Location: Contig00569:882299...910822
NR annotation: CAB3994994.1, Hypothetical predicted protein [Paramuricea clavata]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G391510

ATGTCATTCTTTCTTGATAAAAATGGTTTTGATATAATAATAAAGGGTCCTCTTACAGTTTGTATTCAAGAACTTGATGGATCGTTCAAGCACACAGTTCAGATTGAAGATTCTTTAAGTCACCATGAATTGCAATGTCATTCTAAGAGCAGACGAAATAAACGAAAGAAGATTCCTCTTATGACTGGAGAAGAAGTGGACATAGATCTAGATACTATGGATTCTGACTCGCCTGTGTTGTGGATTCGAATTGATCCGGAAGTGAATCTTATACGTCAGGTGACCTTCGAGCAGCCTGACTTTATGTGGCATTTTCAGTTGAGGCATGAACGAGACGTAATTGCTCAGGCAGAGGCTATAGAAAATTTAGGAGGTTTTGCAACGCGTCAAACAATGGCAGCTTATAGTGATATGGCGAAACAAAAAGAATGTTTTTACAAAGTACGACTTCAAGCCATTGAAAGGCTAGCTAAGCTTAGTAACGTCACTGGTGAAGCTTGGAACATTCATTTGACAATGATATCATCATTTCAAGATCTTTTTGGATCCCAAGCATGTTCCACTATAGTTAGATACAACGACTTCTCGAATTTTATTGACTATTTTGTACAAAAGGCACTAGTTTTTTGTATTGGATTTTGTAGAGATGTTCACTCACAATGTCCTAAAGCTGTTGTCCAGTTTCTTTTTGATCTACTAAAATACAATGATAATAGGTTGAACAAGTTTTCATTAAAATGTGAACCAGCAATTCTAAAAAAACAAAACAAAACATGCCACATTAAGGCTTTTAGTATGCAGTTTCGAGCGTTGTTTTCGTCTTCGCAGTATGGTGCGGAGTATTACTCAGACAGTTATTACATTAGCGCCATTATAGGTGGCCTGGTGAACACTATAACAGCGACTGTACCCGTCATAACCACCGACAGGAAGAACTCAATGTTGTTGTTTCCTTCTTATAGTGAAGGGAAACAAACTGTGAAACTTTCAGAAGAATGCAAGGTTATCTTAGCCGAAATTACGAAGCATTTAAATCTTGAGAAACTACTTCCCTCTTATAAATATGTTGTGACAACAAGTTGTTTAAAAGGTCTACGACTTCTGCAAACCAATGGGCACGTTCCTTCAGACTCTGATGTGTTCAAGTACTTCGCAAGCGTAAAAACTGATGTCTTACGAAGTAATAAGGAGATTATTATTCTTGGTGACTTTAATTTTCCAAAGATTAAATGGATCGCCCCTTCTACAATATCTTCTACGTCTGACGAATTTATATTTTGTGAAACACTACATGATTACTACTTAACTCAATTGGTATCAACACCGACACGACAGACAAACAGCGTCCAAGAAAGTATCCTTGATTTAATTATTACCAACTATCCTGATTATGTCACAAATGTCCAGGTGGTGCCGCCGGATGAAGTACAGTTCCACACAGATCATTGCCTTTTACTTTTTGAATATAATGTCAAGCCTAAACACCAACCAAAACGAGCCCGTTTTGTATATTGTTACAAGAGAGCTGATTTCGATGGTTTACGAACGTCACTAAGAGACACACCTTTTGACTCTTGTTTTCAAAACGACGACATTAACGATAACTGGCAGTGTTGGTACAATCTTTTTATCACCGCAGTAGAGCAGCATGTCCCAAAGTTGAAAATCAGAAACGTTAACAACCCTCCATGGATCGACGGGGAAATCCTACATCTTCTTCATCTAAAGAATTCTACTAGGAAAAAAGCGTTAAAAGATAATCCAAAACGTTTTTGGTCATATTTAAAAGCTCGCACTAAATCTGGATCGATTCCTAACATTGTAAAATCTAATAACTTGCGGTACCAGGATCCAAAAGATAAAGCTGAAGCTTTTAACAACTACTTTTTCTCATCCTTTACTTCTTCTGCCGACGATCTTCCTATTCCAGACTTTACAGTAGACAGTGATTCTGGAGCAGCTTGTTTAGAAGATATCATTCTAACCAGCGAAGAAGTTGCAAGAGCATTGAGTCAGCTTCAGTCTAACAAAGCTCATGGTCCTGACGGTATCCCGACAAGAATACTAAAGGAATGCGCAAATGAAATCGCTCCTTCATTATGTTGTTTATTCAACAAATCCCTTGAACTTGGTTGCTTACCATCGCAGTGGAAACTTGCTCATGTTGTGCCGGTTCACAAAAAAGGTGATAAAGAACTCGTGTCCAACTACCGACCTATATCTCTTTTATGTATCATATCTAAAGTTCTTGAACGCTGTGTGTTTCTAAACGTTCTTCCGCATGTTTCATCCAAGATCAACAGTGCTCAGCATGGTTTTTTGAAAGGCCGATCAACAGTCACGCAACTTCTATGCTTCCTACACGATATTGGTTCTGCACTTGACAAAGGTTTTCAAACGGATATAGTATACCTTGACTTCAGTAAAGCCTTTGACAGTGTTAACCATAAGCTGCTCATCCACAAATTACGAGCCTATGGTATTGGTGGAAATCTTGCTGCTTGGTTCTCCAATTACCTAACAAATCGATTTCAAAGCGTTGTAGTTGATGGTGCAGTTTCTAGCGCTCTTCCTGTTTTATCCGCTGTACCACAAGGATCGATCTTAGGTCCTCTACTATTTATGATTTATGTGAATGAACTACCCGCTATAAATTCAGAAAGCAGCTCCCTTTACCTCTATGCAGATGACACAAAGTGCTATAGAACCATCCACCAAACCGCTGATGCAATCGCTCTACAAAACGATCTCAAACTTCTCTACGACTGGAGTAAGAAATGGCTTCTAAAATTCAATGAACTCAAATGCGAGTCTCTTTCTGTTACAAGAAAGAAAAACCCGGTGTGCTTTGATTACCAGATGGGTAGCCACGTCCTCGGTTCTACATCTACCCAGAAAGATCTTGGAGTGATGGTGACTTCTGATCTCACGTGGAAATCACATACGTCCCATGCGGTTAGTAAAGCGCACAGAATACTTGGACTATTGAAACGGAACACCAAGTCATTCAGTGTTAGTTCAAAGAGATTGCTTTACCTGGCCCTTGTTCGTCCTCATGTTGACTATGCTAGTGAAATATGGTCTGGCCAATCAGTCAATCAGATGAGAGATATCGAGGGCGTCCAAAGGCGAGCTACAACATATATCCTTGGCATACCAAAGTTGTCGGGACATTTTGAAGATATTCGCTTAACCGCAATCGAATGTTTGGTAGATTTTGTAAAAGCTGACGGGAGCAGTGATATTCTTGATTTGTTATTGACGTTGGCAGACCAAGACCCTTCGCCAAATATCAGACATAGTATTTTTCGAATGATGACAGAGAATCCACCGTTTACAAGAAAATCAAATTCAGCACTGAATAATTTGGCCCTCGTTGAGAAACTTTGGAACTACGCTGGCAAATGGTGGGCTGATGCACGTTTAAGATGTGATGTTATGGATCTTTACAATGCATTATGGGGCAGAATTACTCCTGGATGTGTTCCTACTCAAGGGATGGGTATTCTGATTGATTTAAAAGAAAAAAGGATTACCAATCTCTCGCCTCTTCCACCAGCGCAACATTCTTCGAATCTTGAAAACAGTCAGGAGGCGAGAAAAGATGAAAGTGAGTCAAGTAAAGAAAAGAAGAGAAAGAAAATGCGTCCTATGTCTCCCTCAGGTAAAAGCATTCCTGAGTCACTGCCCTCCACGCCATTGAACCCAGAATCTCTGTCATCGAGTAGTCATAAACTGAAGTTAAAAATAAAGCTCGGTGACGAAGACGCTCCTCATGGTAGTAACAGCGGCGAGTCTCAAGTGAAAACCGAACGCGAAGCGAAAAACGGCGAACGAGACAAGAAGAAACACAAGAAAAAGAAAAAGAAGAAACACAAAGATGAACACAGACGTCAAGTCAGTAACAGCAGTGCAGGTGGCTCACCTTTGACTCACGAGTCAACAAGTAACCAAAGTTACACAAGCCAGTGA

Transcript

Ppa0G391510

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5ZIT8	Transcription initiation factor TFIID subunit 2 OS=Gallus gallus OX=9031 GN=TAF2 PE=2 SV=1
Q6P1X5	Transcription initiation factor TFIID subunit 2 OS=Homo sapiens OX=9606 GN=TAF2 PE=1 SV=3
Q8C176	Transcription initiation factor TFIID subunit 2 OS=Mus musculus OX=10090 GN=Taf2 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000005 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF14529 all species →	Exo_endo_phos_2	Endonuclease-reverse transcriptase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR037813 all species →	Family	Transcription initiation factor TFIID subunit 2	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR036691 all species →	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR005135 all species →	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15137 all species →	TRANSCRIPTION INITIATION FACTOR TFIID	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000976 all species →	Molecular Function	transcription cis-regulatory region binding	Interproscan
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0005669 all species →	Cellular Component	transcription factor TFIID complex	Interproscan
GO:0006367 all species →	Biological Process	transcription initiation at RNA polymerase II promoter	Interproscan
GO:0016251 all species →	Molecular Function	RNA polymerase II general transcription initiation factor activity	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03128	TAF2; transcription initiation factor TFIID subunit 2	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.