Gene detail

Detailed information of Ppa0G391510 in Paragorgia papillata

Genomic Location: Contig00569:882299...910822
NR annotation: CAB3994994.1, Hypothetical predicted protein [Paramuricea clavata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Ppa0G391510

ATGTCATTCTTTCTTGATAAAAATGGTTTTGATATAATAATAAAGGGTCCTCTTACAGTTTGTATTCAAGAACTTGATGGATCGTTCAAGCACACAGTTCAGATTGAAGATTCTTTAAGTCACCATGAATTGCAATGTCATTCTAAGAGCAGACGAAATAAACGAAAGAAGATTCCTCTTATGACTGGAGAAGAAGTGGACATAGATCTAGATACTATGGATTCTGACTCGCCTGTGTTGTGGATTCGAATTGATCCGGAAGTGAATCTTATACGTCAGGTGACCTTCGAGCAGCCTGACTTTATGTGGCATTTTCAGTTGAGGCATGAACGAGACGTAATTGCTCAGGCAGAGGCTATAGAAAATTTAGGAGGTTTTGCAACGCGTCAAACAATGGCAGCTTATAGTGATATGGCGAAACAAAAAGAATGTTTTTACAAAGTACGACTTCAAGCCATTGAAAGGCTAGCTAAGCTTAGTAACGTCACTGGTGAAGCTTGGAACATTCATTTGACAATGATATCATCATTTCAAGATCTTTTTGGATCCCAAGCATGTTCCACTATAGTTAGATACAACGACTTCTCGAATTTTATTGACTATTTTGTACAAAAGGCACTAGTTTTTTGTATTGGATTTTGTAGAGATGTTCACTCACAATGTCCTAAAGCTGTTGTCCAGTTTCTTTTTGATCTACTAAAATACAATGATAATAGGTTGAACAAGTTTTCATTAAAATGTGAACCAGCAATTCTAAAAAAACAAAACAAAACATGCCACATTAAGGCTTTTAGTATGCAGTTTCGAGCGTTGTTTTCGTCTTCGCAGTATGGTGCGGAGTATTACTCAGACAGTTATTACATTAGCGCCATTATAGGTGGCCTGGTGAACACTATAACAGCGACTGTACCCGTCATAACCACCGACAGGAAGAACTCAATGTTGTTGTTTCCTTCTTATAGTGAAGGGAAACAAACTGTGAAACTTTCAGAAGAATGCAAGGTTATCTTAGCCGAAATTACGAAGCATTTAAATCTTGAGAAACTACTTCCCTCTTATAAATATGTTGTGACAACAAGTTGTTTAAAAGGTCTACGACTTCTGCAAACCAATGGGCACGTTCCTTCAGACTCTGATGTGTTCAAGTACTTCGCAAGCGTAAAAACTGATGTCTTACGAAGTAATAAGGAGATTATTATTCTTGGTGACTTTAATTTTCCAAAGATTAAATGGATCGCCCCTTCTACAATATCTTCTACGTCTGACGAATTTATATTTTGTGAAACACTACATGATTACTACTTAACTCAATTGGTATCAACACCGACACGACAGACAAACAGCGTCCAAGAAAGTATCCTTGATTTAATTATTACCAACTATCCTGATTATGTCACAAATGTCCAGGTGGTGCCGCCGGATGAAGTACAGTTCCACACAGATCATTGCCTTTTACTTTTTGAATATAATGTCAAGCCTAAACACCAACCAAAACGAGCCCGTTTTGTATATTGTTACAAGAGAGCTGATTTCGATGGTTTACGAACGTCACTAAGAGACACACCTTTTGACTCTTGTTTTCAAAACGACGACATTAACGATAACTGGCAGTGTTGGTACAATCTTTTTATCACCGCAGTAGAGCAGCATGTCCCAAAGTTGAAAATCAGAAACGTTAACAACCCTCCATGGATCGACGGGGAAATCCTACATCTTCTTCATCTAAAGAATTCTACTAGGAAAAAAGCGTTAAAAGATAATCCAAAACGTTTTTGGTCATATTTAAAAGCTCGCACTAAATCTGGATCGATTCCTAACATTGTAAAATCTAATAACTTGCGGTACCAGGATCCAAAAGATAAAGCTGAAGCTTTTAACAACTACTTTTTCTCATCCTTTACTTCTTCTGCCGACGATCTTCCTATTCCAGACTTTACAGTAGACAGTGATTCTGGAGCAGCTTGTTTAGAAGATATCATTCTAACCAGCGAAGAAGTTGCAAGAGCATTGAGTCAGCTTCAGTCTAACAAAGCTCATGGTCCTGACGGTATCCCGACAAGAATACTAAAGGAATGCGCAAATGAAATCGCTCCTTCATTATGTTGTTTATTCAACAAATCCCTTGAACTTGGTTGCTTACCATCGCAGTGGAAACTTGCTCATGTTGTGCCGGTTCACAAAAAAGGTGATAAAGAACTCGTGTCCAACTACCGACCTATATCTCTTTTATGTATCATATCTAAAGTTCTTGAACGCTGTGTGTTTCTAAACGTTCTTCCGCATGTTTCATCCAAGATCAACAGTGCTCAGCATGGTTTTTTGAAAGGCCGATCAACAGTCACGCAACTTCTATGCTTCCTACACGATATTGGTTCTGCACTTGACAAAGGTTTTCAAACGGATATAGTATACCTTGACTTCAGTAAAGCCTTTGACAGTGTTAACCATAAGCTGCTCATCCACAAATTACGAGCCTATGGTATTGGTGGAAATCTTGCTGCTTGGTTCTCCAATTACCTAACAAATCGATTTCAAAGCGTTGTAGTTGATGGTGCAGTTTCTAGCGCTCTTCCTGTTTTATCCGCTGTACCACAAGGATCGATCTTAGGTCCTCTACTATTTATGATTTATGTGAATGAACTACCCGCTATAAATTCAGAAAGCAGCTCCCTTTACCTCTATGCAGATGACACAAAGTGCTATAGAACCATCCACCAAACCGCTGATGCAATCGCTCTACAAAACGATCTCAAACTTCTCTACGACTGGAGTAAGAAATGGCTTCTAAAATTCAATGAACTCAAATGCGAGTCTCTTTCTGTTACAAGAAAGAAAAACCCGGTGTGCTTTGATTACCAGATGGGTAGCCACGTCCTCGGTTCTACATCTACCCAGAAAGATCTTGGAGTGATGGTGACTTCTGATCTCACGTGGAAATCACATACGTCCCATGCGGTTAGTAAAGCGCACAGAATACTTGGACTATTGAAACGGAACACCAAGTCATTCAGTGTTAGTTCAAAGAGATTGCTTTACCTGGCCCTTGTTCGTCCTCATGTTGACTATGCTAGTGAAATATGGTCTGGCCAATCAGTCAATCAGATGAGAGATATCGAGGGCGTCCAAAGGCGAGCTACAACATATATCCTTGGCATACCAAAGTTGTCGGGACATTTTGAAGATATTCGCTTAACCGCAATCGAATGTTTGGTAGATTTTGTAAAAGCTGACGGGAGCAGTGATATTCTTGATTTGTTATTGACGTTGGCAGACCAAGACCCTTCGCCAAATATCAGACATAGTATTTTTCGAATGATGACAGAGAATCCACCGTTTACAAGAAAATCAAATTCAGCACTGAATAATTTGGCCCTCGTTGAGAAACTTTGGAACTACGCTGGCAAATGGTGGGCTGATGCACGTTTAAGATGTGATGTTATGGATCTTTACAATGCATTATGGGGCAGAATTACTCCTGGATGTGTTCCTACTCAAGGGATGGGTATTCTGATTGATTTAAAAGAAAAAAGGATTACCAATCTCTCGCCTCTTCCACCAGCGCAACATTCTTCGAATCTTGAAAACAGTCAGGAGGCGAGAAAAGATGAAAGTGAGTCAAGTAAAGAAAAGAAGAGAAAGAAAATGCGTCCTATGTCTCCCTCAGGTAAAAGCATTCCTGAGTCACTGCCCTCCACGCCATTGAACCCAGAATCTCTGTCATCGAGTAGTCATAAACTGAAGTTAAAAATAAAGCTCGGTGACGAAGACGCTCCTCATGGTAGTAACAGCGGCGAGTCTCAAGTGAAAACCGAACGCGAAGCGAAAAACGGCGAACGAGACAAGAAGAAACACAAGAAAAAGAAAAAGAAGAAACACAAAGATGAACACAGACGTCAAGTCAGTAACAGCAGTGCAGGTGGCTCACCTTTGACTCACGAGTCAACAAGTAACCAAAGTTACACAAGCCAGTGA

Transcript

Ppa0G391510

Protein

Uniprot

Uniprot term	Description
Q5ZIT8	Transcription initiation factor TFIID subunit 2 OS=Gallus gallus OX=9031 GN=TAF2 PE=2 SV=1
Q6P1X5	Transcription initiation factor TFIID subunit 2 OS=Homo sapiens OX=9606 GN=TAF2 PE=1 SV=3
Q8C176	Transcription initiation factor TFIID subunit 2 OS=Mus musculus OX=10090 GN=Taf2 PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF14529	Exo_endo_phos_2	Endonuclease-reverse transcriptase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR037813	Family	Transcription initiation factor TFIID subunit 2	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR005135	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15137	TRANSCRIPTION INITIATION FACTOR TFIID	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000976	Molecular Function	transcription cis-regulatory region binding	Interproscan
GO:0003682	Molecular Function	chromatin binding	Interproscan
GO:0005669	Cellular Component	transcription factor TFIID complex	Interproscan
GO:0006367	Biological Process	transcription initiation at RNA polymerase II promoter	Interproscan
GO:0016251	Molecular Function	RNA polymerase II general transcription initiation factor activity	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03128	TAF2; transcription initiation factor TFIID subunit 2	-	Chromosome and associated proteins	ko03036	deepkoala