Gene detail

Detailed information of Ppa0G397920 in Paragorgia papillata

Genomic Location: Contig00577:2483035...2495724
NR annotation: XP_028411922.1, elongator complex protein 3 [Dendronephthya gigantea]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
Q5RIC0	Elongator complex protein 3 OS=Danio rerio OX=7955 GN=elp3 PE=2 SV=3
Q5ZHS1	Elongator complex protein 3 OS=Gallus gallus OX=9031 GN=ELP3 PE=2 SV=1
Q6NVL5	Elongator complex protein 3 OS=Xenopus tropicalis OX=8364 GN=elp3 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04055	Radical_SAM	Radical SAM superfamily	Domain	Interproscan
PF16199	Radical_SAM_C	Radical_SAM C-terminal domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016181	Homologous_superfamily	Acyl-CoA N-acyltransferase	Interproscan
IPR006638	Domain	Elp3/MiaA/NifB-like, radical SAM core domain	Interproscan
IPR034687	Family	Elongator complex protein 3-like	Interproscan
IPR007197	Domain	Radical SAM	Interproscan
IPR032432	Domain	Radical SAM, C-terminal extension	Interproscan
IPR039661	Family	ELP3/YhcC	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11135	HISTONE ACETYLTRANSFERASE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0051536	Molecular Function	iron-sulfur cluster binding	Interproscan
GO:0002926	Biological Process	tRNA wobble base 5-methoxycarbonylmethyl-2-thiouridinylation	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0033588	Cellular Component	elongator holoenzyme complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K07739	ELP3, KAT9; elongator complex protein 3 (tRNA carboxymethyluridine synthase)	EC:2.3.1.311	Transfer RNA biogenesis	ko03016	deepkoala